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BioLiP
>protein
QVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ejw:A 80 52 1.0000 0.6500 1.0000 7.14e-33 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
2 5epl:B 58 52 0.7308 0.6552 0.7308 2.63e-25 5epl:A
3 3gv6:A 56 52 0.7115 0.6607 0.7115 1.10e-23 3i90:A, 3i90:B
4 5eq0:A 55 52 0.6731 0.6364 0.6731 6.63e-23 3i91:A
5 5epk:A 54 52 0.6538 0.6296 0.6538 1.90e-22 3h91:A, 3h91:B
6 1pfb:A 55 50 0.5962 0.5636 0.6200 5.57e-17 1pdq:A
7 7vyw:A 47 38 0.4423 0.4894 0.6053 2.19e-13
8 6asz:A 53 48 0.5000 0.4906 0.5417 8.62e-13 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
9 3tzd:A 58 47 0.4423 0.3966 0.4894 8.12e-12 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
10 2rvn:A 83 50 0.4038 0.2530 0.4200 3.03e-10
11 1guw:A 73 39 0.4038 0.2877 0.5385 6.39e-10 6d07:A, 6d07:B, 6d08:A, 6d08:B
12 8uxq:A 170 45 0.4038 0.1235 0.4667 9.19e-10 3fdt:A
13 6v41:AAA 61 43 0.4038 0.3443 0.4884 2.28e-09
14 7n27:A 57 43 0.3846 0.3509 0.4651 4.40e-09 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
15 3qo2:A 61 47 0.4038 0.3443 0.4468 4.84e-08 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
16 6v2d:G 64 42 0.3846 0.3125 0.4762 1.28e-07 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
17 4u68:A 64 49 0.3846 0.3125 0.4082 1.49e-06 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
18 7vrf:A 61 46 0.3269 0.2787 0.3696 6.03e-06 7vrf:B
19 2rsn:A 75 42 0.3269 0.2267 0.4048 5.39e-05 3g7l:A
20 2b2w:A 177 25 0.2500 0.0734 0.5200 1.68e-04 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
21 6s47:Bi 952 35 0.2885 0.0158 0.4286 8.67e-04
22 6ryr:W 708 25 0.2115 0.0155 0.4400 0.026 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
23 7ubu:A 708 29 0.1923 0.0141 0.3448 0.076 4ft4:A, 4ft4:B
24 4fsx:A 680 29 0.1923 0.0147 0.3448 0.078 4fsx:B, 4ft2:B, 4ft2:A
25 3oa6:A 84 23 0.1731 0.1071 0.3913 0.093 3oa6:B
26 6q3m:C 219 25 0.2115 0.0502 0.4400 0.11 6q3m:A, 6q3m:B
27 6guu:B 204 25 0.2308 0.0588 0.4800 0.11 6guu:A
28 5fm6:A 426 42 0.2885 0.0352 0.3571 2.0 5fm7:A, 4ww4:A
29 3ui2:A 234 28 0.2692 0.0598 0.5000 3.5 3dep:A, 2hug:A
30 5e4w:C 105 28 0.2692 0.1333 0.5000 3.7 5e4w:D, 5e4x:A
31 7uci:A 686 35 0.2308 0.0175 0.3429 4.0 7uci:B
32 7ucl:A 616 35 0.2308 0.0195 0.3429 4.1 7ucl:B
33 6jt5:A 409 19 0.1346 0.0171 0.3684 5.2 6jwf:A, 6jwf:B
34 8u5y:B 700 31 0.2308 0.0171 0.3871 6.0 8u5y:A, 8u5y:C, 8u61:B, 8u61:A, 8u61:C
35 2c9o:A 398 48 0.3269 0.0427 0.3542 7.8 2c9o:B
36 6f7c:F 281 34 0.2115 0.0391 0.3235 8.3 7zx2:F
37 7ole:C 427 48 0.3269 0.0398 0.3542 9.0 7ole:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417