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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTIKIGAQSMSESEIIASMQGQLIEHHTDLKTTTIKNLGQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQ
REFKKRYDLKWYDSYGFDNTYAFTVSKELADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYP
MQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDTATMQE
LNYEVDGNLKEPSVVAKEYLEKHRYFE

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6eyh:A 280 272 0.9925 0.9464 0.9743 0.0 6eyl:A, 6eyl:B, 5nxy:A, 5nxy:C, 3r6u:A
2 3ppo:A 272 271 0.7228 0.7096 0.7122 1.96e-144 3ppo:B, 3ppq:A, 3ppq:B, 3ppr:A, 3ppr:B
3 7s7x:A 278 270 0.3783 0.3633 0.3741 7.16e-59 7s7x:B, 7s7x:C, 6v1r:A
4 7s7t:A 509 192 0.2809 0.1473 0.3906 1.70e-44 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
5 7s7t:A 509 102 0.1199 0.0629 0.3137 5.86e-04 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
6 7txl:A 275 270 0.3521 0.3418 0.3481 1.93e-44 7txk:A, 7txk:B, 7txl:B
7 8dp7:A 265 263 0.3184 0.3208 0.3232 2.91e-40 8dp7:B, 8dp7:C, 8dp7:D, 8dp7:E
8 1sw1:A 270 270 0.2921 0.2889 0.2889 1.26e-27 1sw1:B, 1sw4:A, 1sw4:B
9 6w2k:A 440 143 0.1461 0.0886 0.2727 1.6 5afa:A, 5g3b:A, 5g3c:A, 5g3d:A, 5g3e:A, 5g3f:A, 5g3g:A, 5g3h:A, 5jrr:A, 5jx9:A, 5k0d:A, 5k15:A, 5k3k:A, 5k5k:A, 5k7a:A, 5k84:A, 6q29:A, 6tyr:A, 6w2k:B, 6w9x:A, 6wcg:A, 6wch:A, 6wcl:A, 6wcm:A, 6wcn:A, 6wcp:A, 2xu9:A, 2yae:A, 2yaf:A, 2yah:A, 2yam:A, 2yao:A, 2yap:A, 2yaq:A, 2yar:A
10 2oje:D 214 75 0.0749 0.0935 0.2667 6.5 2icw:G, 2icw:H, 2oje:H, 1r5i:D, 1r5i:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218