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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFS
IEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFKMFA
VFCALALHCANMYHRIR

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2zmf:A 177 177 1.0000 1.0000 1.0000 1.32e-132 2zmf:B
2 3ibj:A 661 170 0.3955 0.1059 0.4118 1.08e-33 4c1i:A, 4c1i:B, 4c1i:C, 4c1i:D, 6c7d:A, 6c7d:B, 6c7d:C, 6c7d:D, 6c7e:A, 6c7e:B, 6c7e:C, 6c7e:D, 6c7f:A, 6c7f:B, 6c7f:C, 6c7g:A, 6c7g:B, 6c7g:C, 6c7g:D, 6c7i:A, 6c7i:B, 6c7i:C, 6c7i:D, 6c7j:A, 6c7j:B, 6c7j:C, 6c7j:D, 4d08:A, 4d08:B, 4d08:C, 4d08:D, 4d09:A, 4d09:B, 4d09:C, 4d09:D, 6ezf:A, 4htx:A, 4htx:B, 4htx:C, 4htx:D, 4htz:A, 4htz:B, 4htz:C, 4htz:D, 3itm:A, 3itm:B, 3itm:C, 3itm:D, 3itu:A, 3itu:B, 3itu:C, 3itu:D, 4jib:A, 4jib:B, 4jib:C, 4jib:D, 1mc0:A, 5tz3:A, 5tz3:B, 5tz3:C, 5tz3:D, 5tza:A, 5tza:B, 5tza:C, 5tza:D, 5tzc:A, 5tzc:B, 5tzc:C, 5tzc:D, 5tzh:A, 5tzh:B, 5tzh:C, 5tzh:D, 5tzw:A, 5tzw:B, 5tzw:C, 5tzw:D, 5tzx:A, 5tzx:B, 5tzx:C, 5tzx:D, 5tzz:A, 5tzz:B, 5tzz:C, 5tzz:D, 5u00:A, 5u00:B, 5u00:C, 5u00:D, 5u7d:A, 5u7d:B, 5u7d:C, 5u7i:A, 5u7i:B, 5u7i:C, 5u7i:D, 5u7j:A, 5u7j:B, 5u7j:C, 5u7j:D, 5u7k:A, 5u7k:B, 5u7k:C, 5u7k:D, 5u7l:A, 5u7l:B, 5u7l:C, 5vp0:A, 5vp0:B, 5vp0:C, 5vp1:A, 5vp1:B, 5vp1:C, 5xkm:A, 5xkm:B, 5xkm:C, 5xkm:D, 5xkm:E, 5xkm:F, 1z1l:A, 6znd:A, 6znd:B, 6zqz:A, 6zqz:B, 6zqz:C, 6zqz:D
3 2k31:A 149 150 0.3785 0.4497 0.4467 5.93e-32
4 4mcw:B 363 146 0.3051 0.1488 0.3699 2.05e-28 4mcw:A, 4mdz:A, 4mdz:B, 4me4:A, 4me4:B
5 3ibj:B 643 170 0.3446 0.0949 0.3588 7.02e-26
6 3dba:A 171 155 0.2881 0.2982 0.3290 1.12e-20 3dba:B
7 1ykd:A 383 177 0.3333 0.1540 0.3333 2.66e-20 1ykd:B
8 1ykd:A 383 179 0.3164 0.1462 0.3128 7.33e-18 1ykd:B
9 5w10:A 173 153 0.2599 0.2659 0.3007 3.97e-20 5w10:B, 5w10:C, 5w10:D
10 8ulg:B 824 143 0.2712 0.0583 0.3357 4.20e-18 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
11 8ulg:B 824 115 0.1808 0.0388 0.2783 6.92e-07 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B
12 8ulg:A 827 154 0.2599 0.0556 0.2987 7.89e-16 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
13 8ulg:A 827 112 0.1582 0.0339 0.2500 1.60e-05 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
14 4mn7:B 142 99 0.1243 0.1549 0.2222 0.11
15 6ob8:A 307 108 0.1412 0.0814 0.2315 0.75 6oap:A, 6oap:B, 6oaq:A, 6oaq:B, 6ob8:B
16 2vnt:B 258 45 0.0678 0.0465 0.2667 2.5 6ag2:U, 6ag3:U, 6ag7:U, 6ag9:U, 1c5w:B, 1c5x:B, 1c5y:B, 1c5z:B, 7dzd:U, 1ejn:A, 1f5k:U, 1f5l:A, 1f92:A, 4fu7:A, 4fu8:A, 4fu9:A, 4fub:A, 4fuc:A, 4fud:A, 4fue:A, 4fuf:A, 4fug:A, 4fuh:A, 4fui:A, 4fuj:A, 1fv9:A, 1gi7:B, 1gi8:B, 1gi9:B, 1gj7:B, 1gj8:B, 1gj9:B, 1gja:B, 1gjb:B, 1gjc:B, 1gjd:B, 4gly:A, 4h42:U, 3ig6:B, 3ig6:D, 4jk5:A, 4jk6:A, 6jyp:U, 6jyq:U, 3kgp:A, 3khv:A, 3kid:U, 6l04:U, 6l05:U, 1lmw:B, 1lmw:D, 3m61:U, 3mhw:U, 4mnv:A, 4mnw:A, 4mnx:A, 4mny:A, 4mny:B, 3mwi:U, 6nmb:A, 6nmb:B, 6nmb:C, 6nmb:D, 2nwn:A, 1o3p:B, 1o5a:B, 1o5b:B, 1o5c:B, 2o8w:A, 4os1:A, 4os2:A, 4os4:A, 4os5:A, 4os6:A, 4os7:A, 1owd:A, 1owe:A, 1owh:A, 1owi:A, 1owj:A, 1owk:A, 3ox7:U, 3oy5:U, 3oy6:U, 3qn7:A, 2r2w:U, 1sc8:U, 1sqa:A, 1sqo:A, 1sqt:A, 1u6q:A, 2vin:A, 2vio:A, 2vip:A, 2viq:A, 2viv:A, 2viw:A, 1vj9:U, 1vja:U, 7vm4:U, 7vm5:U, 7vm6:U, 7vm7:U, 2vnt:A, 2vnt:F, 2vnt:C, 2vnt:D, 2vnt:E, 1w0z:U, 1w10:U, 1w11:U, 1w12:U, 1w13:U, 1w14:U, 5wxf:U, 5wxo:U, 5wxp:U, 5wxq:U, 5wxr:U, 5wxs:U, 5wxt:U, 4x0w:U, 4x1n:U, 4x1p:U, 4x1q:U, 4x1r:U, 4x1s:U, 5xg4:U, 6xvd:U, 5yc6:U, 5yc7:U, 5z1c:U, 5za7:U, 5za8:U, 5za9:U, 5zae:U, 5zaf:U, 5zag:U, 5zah:U, 5zaj:U, 5zc5:U, 4zhl:U, 4zhm:U, 4zkn:U, 4zko:U, 4zkr:U, 4zks:U, 7zrr:A, 7zrt:A
17 2uuu:A 550 52 0.0734 0.0236 0.2500 7.8 2uuu:B, 2uuu:C, 2uuu:D, 2uuv:A, 2uuv:B, 2uuv:C, 2uuv:D
18 7ld5:A 587 118 0.1977 0.0596 0.2966 8.6 7ld5:B, 7ld5:C
19 3u5o:C 195 53 0.0791 0.0718 0.2642 8.8 8bd8:A, 8bd9:A, 8bdy:A, 5mr8:A, 3u5m:A, 3u5m:B, 3u5m:C, 3u5m:D, 3u5m:F, 3u5m:G, 3u5m:H, 3u5m:I, 3u5m:K, 3u5m:J, 3u5m:L, 3u5n:A, 3u5n:B, 3u5o:A, 3u5o:B, 3u5o:D, 3u5o:E, 3u5o:F, 3u5o:G, 3u5o:H, 3u5p:A, 3u5p:B, 3u5p:C, 3u5p:D, 3u5p:E, 3u5p:F, 3u5p:G, 3u5p:H, 7zdd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218