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BioLiP
>protein
QTARAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2fpd:C 62 58 0.9828 0.9194 0.9828 2.16e-37 7nyl:AAA
2 5xhz:A 60 56 0.3103 0.3000 0.3214 2.86e-06 5xhz:B
3 4x1v:A 59 55 0.2759 0.2712 0.2909 4.33e-06 3u23:A
4 2ak5:B 64 55 0.3621 0.3281 0.3818 3.60e-04 2df6:A, 2df6:B
5 1zsg:A 65 55 0.3793 0.3385 0.4000 7.77e-04 2p4r:A, 5sxp:B, 5sxp:D, 5sxp:A, 5sxp:C
6 6b27:A 118 54 0.2931 0.1441 0.3148 0.012 6b27:B, 6b27:C, 6b27:D, 6b27:E, 6b27:F
7 4f14:A 56 52 0.2759 0.2857 0.3077 0.016
8 3i5r:A 81 65 0.3103 0.2222 0.2769 0.028
9 6vld:B 469 48 0.2586 0.0320 0.3125 0.031 6tkv:A, 6tkv:B, 6vld:A, 6vlg:A, 6vlg:B, 6vlg:C, 6vlg:D, 6x5h:A, 6x5h:B, 6x5h:C, 6x5r:B, 6x5r:A, 6x5s:A, 6x5s:B, 6x5t:A, 6x5t:B, 6x5t:C, 6x5t:D, 6x5t:E, 6x5t:F, 6x5t:G, 6x5t:H, 6x5u:E, 6x5u:B, 6x5u:D, 6x5u:F, 6x5u:A, 6x5u:G, 6x5u:C, 6x5u:H
10 7uy0:A 448 53 0.2414 0.0312 0.2642 0.034 7uy0:B, 7uy3:A
11 2sem:B 59 53 0.2759 0.2712 0.3019 0.039 1sem:A, 1sem:B, 2sem:A, 3sem:A, 3sem:B
12 1b07:A 59 50 0.2759 0.2712 0.3200 0.040 6atv:A, 1cka:A, 1ckb:A, 5ih2:A, 5ih2:B, 5l23:A, 5ul6:A
13 2bz8:B 57 52 0.2759 0.2807 0.3077 0.054 2bz8:A
14 4e6r:A 58 51 0.3103 0.3103 0.3529 0.061
15 6ipz:Z 63 53 0.2414 0.2222 0.2642 0.065 1a0n:B, 1azg:B, 4eik:A, 1fyn:A, 8kdx:A, 3ua7:A, 3ua7:D, 3ua7:C, 4znx:A, 4znx:D, 4znx:B, 4znx:C
16 4lnp:A 61 51 0.3103 0.2951 0.3529 0.10
17 1lck:A 164 46 0.2241 0.0793 0.2826 0.19 1bhf:A, 1cwd:L, 1cwe:A, 1cwe:C, 1fbz:A, 1fbz:B, 2iim:A, 1ijr:A, 1lcj:A, 1lkk:A, 1lkl:A, 1x27:A, 1x27:B, 1x27:C, 1x27:D, 1x27:E, 1x27:F
18 2d1x:C 66 52 0.2586 0.2273 0.2885 0.34 2d1x:A, 2d1x:B, 2d1x:D, 5nv1:A, 7pll:A, 3ulr:B
19 2o9v:A 67 52 0.2414 0.2090 0.2692 0.70 4ln2:A
20 6f55:A 67 55 0.2586 0.2239 0.2727 0.73
21 6a9c:B 66 54 0.2241 0.1970 0.2407 1.2
22 2wkw:A 315 32 0.2414 0.0444 0.4375 1.5 2wkw:B
23 8qlp:B 452 21 0.1379 0.0177 0.3810 2.4 8qlp:F, 8qlp:J, 8qlp:N
24 6g5q:B 381 34 0.1897 0.0289 0.3235 3.1 6g5o:A, 6g5o:B, 6g5q:A
25 3tto:A 1055 47 0.2759 0.0152 0.3404 3.6 3tto:B, 3tto:C, 3tto:D, 3ttq:A, 4ttu:A, 4tvc:A, 4tvd:A
26 8k34:B 434 21 0.1379 0.0184 0.3810 3.7 8ifl:B, 8ifl:G, 8ifl:K, 8ifl:O, 8ifm:B, 8ifm:G, 8ifm:K, 8ifm:O
27 8ifk:B 409 21 0.1379 0.0196 0.3810 3.9
28 8isz:A 465 21 0.1379 0.0172 0.3810 4.1 8it0:A, 8it0:E, 8it1:I, 8it1:M, 8it1:A, 8it1:E, 8j8h:A, 8j9g:A, 8j9p:A, 8j9p:C, 8jay:A, 8jay:C, 8jay:I, 8jay:M, 8k9g:A, 8k9g:E, 8u72:C, 8u72:E, 8u72:I, 8u72:G
29 8u7b:C 507 21 0.1379 0.0158 0.3810 4.2
30 2rpn:A 59 52 0.2241 0.2203 0.2500 4.3
31 4wpc:B 288 37 0.2241 0.0451 0.3514 4.4 4wpc:A
32 6p6j:A 571 23 0.2069 0.0210 0.5217 6.2 8vsi:A
33 8oz6:B 473 21 0.1379 0.0169 0.3810 7.0 8ffi:B, 8ffi:F, 8ffi:L, 8ffi:N, 8i87:F, 8i87:T, 8i87:B, 8i87:D, 8i88:B, 8j7s:A, 8j7s:E, 8j7s:I, 8j7s:M, 8jr8:A, 8jr8:C, 8oz6:D, 8oz6:F, 8oz6:H, 8ozd:B, 8ozd:D, 8oze:F, 8oze:H, 8ozf:B, 8ozf:E, 8ozf:G, 8ozf:M, 8ozg:B, 8ozg:E, 8ozg:G, 8ozg:M, 8ozi:B, 8ozi:D, 8ozi:F, 8ozi:H, 8sp0:B, 8sp0:F, 8sp3:B, 8sp3:F, 8spo:B, 8spo:F, 8spo:L, 8spo:N, 8squ:B
34 1z41:A 337 28 0.1897 0.0326 0.3929 8.6 1z41:B, 1z42:A, 1z42:B, 1z44:A, 1z44:B, 1z48:A, 1z48:B
35 4xvi:A 647 24 0.1897 0.0170 0.4583 10.0 4xvk:A, 4xvl:A, 4xvm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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