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BioLiP
>protein
QSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLAD
EVSASLAKQG

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ttl:A 90 90 1.0000 1.0000 1.0000 5.76e-62 7sp1:B, 7sp1:C, 7sp1:F, 7sp1:G, 7sp1:J, 7sp1:L, 7sp1:N, 7sp1:A, 7sp1:D, 7sp1:E, 7sp1:H, 7sp1:I, 7sp1:K, 7sp1:M, 7sp1:O, 8ttl:B, 8ttl:C
2 7upg:A 75 29 0.3222 0.3867 1.0000 5.20e-15 8fug:A, 8fug:B, 8fug:C, 8fug:D, 8fug:E, 8fug:F, 8fug:G, 8fug:H, 8fug:I, 8fug:J, 8fug:K, 8fug:L, 8fug:M, 8fug:N, 8fug:O, 8fug:P, 8fug:Q, 8fug:R, 8fug:S, 8fug:T, 8fug:U, 8fug:V, 8fug:W, 7upg:F, 7upg:E, 7upg:B, 7upg:C, 7upg:D, 7upg:J, 7upg:I, 7upg:G, 7upg:H, 8uq7:A, 8uq7:B, 8uq7:C, 8uq7:D
3 5xun:B 171 32 0.1444 0.0760 0.4062 0.68 5xun:A
4 5fs9:B 465 64 0.1889 0.0366 0.2656 2.0 4bur:A, 4bur:B, 4bur:C, 4fdc:B, 5fs6:A, 5fs6:B, 5fs7:A, 5fs7:B, 5fs9:A, 3gd3:A, 3gd4:A, 1m6i:A, 5miu:A, 5miu:B, 5miv:A, 5miv:C, 8qns:A, 8qns:G
5 8d3i:A 439 64 0.1889 0.0387 0.2656 2.1 4bur:D, 8d3e:A, 8d3e:B, 8d3g:A, 8d3g:B, 8d3h:A, 8d3h:B, 8d3i:B, 8d3j:A, 8d3j:B, 8d3k:A, 8d3k:B, 8d3n:A, 8d3n:B, 8d3o:A, 8d3o:B, 3gd4:B, 5kvh:A, 5kvh:B, 8qns:D, 8qns:J
6 7ypo:A 327 34 0.1444 0.0398 0.3824 2.8 7ypo:B, 7ypo:C, 7ypo:D, 7ypq:A
7 3dme:A 366 35 0.1111 0.0273 0.2857 3.2 3dme:B
8 8h97:A 619 76 0.2444 0.0355 0.2895 4.4
9 3zd9:A 249 40 0.1667 0.0602 0.3750 5.6 3zd8:A, 3zd8:B, 3zda:A, 3zdb:A, 3zdc:A, 3zdd:A
10 8u8x:A 308 65 0.2222 0.0649 0.3077 6.5 7jxh:B, 7jxh:A, 7jxh:C, 7jxh:D, 7jxh:E, 7jxh:F, 7jxh:G, 7jxh:H, 7pcd:A, 3pp0:A, 3pp0:B
11 7s5f:B 309 71 0.2333 0.0680 0.2958 8.4 7s5f:A, 7s5f:C, 7s5f:D
12 4buc:A 427 40 0.1333 0.0281 0.3000 9.3 4buc:B
13 4gey:A 420 49 0.1667 0.0357 0.3061 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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