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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTI
KFYIQNLHTMDEAAAAAAAAAGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPAAAAAAAAADHVMSFSIVDDKIWVRT
YESLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSNDA
LF

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nac:A 266 260 0.9298 0.8459 0.8654 3.90e-165 6c0f:b, 6cb1:b, 8e5t:b, 6elz:A, 6em1:A, 6em3:A, 6em4:A, 7ohr:A, 7ohs:A, 7ohv:A, 7ohw:A, 7r7a:A, 8v83:A, 8v84:A, 8v87:A, 5z3g:a
2 8eti:A 254 243 0.5331 0.5079 0.5309 4.55e-100 8esq:A, 8esr:A, 8etg:A, 8eth:A, 8eup:A, 8euy:A, 8ev3:A
3 8i9p:CA 260 241 0.5372 0.5000 0.5394 8.52e-97 8i9r:CA, 8i9t:CA, 8i9v:CA, 8i9w:CA, 8i9x:CA, 8i9y:CA, 8i9z:CA, 8ia0:CA
4 8fkp:SO 307 246 0.4504 0.3550 0.4431 6.82e-79 8fkq:SO, 8fkr:SO, 8fks:SO, 8fkt:SO, 8fku:SO, 8fkv:SO, 8fkw:SO, 8fkx:SO, 8fky:SO
5 8fl0:ND 270 88 0.0909 0.0815 0.2500 2.13e-04 8ir1:T, 8ir3:T
6 6rxt:CK 297 146 0.1570 0.1279 0.2603 0.012 5jpq:c, 5oql:b, 6rxu:CK, 6rxv:CK, 6rxx:CK, 6rxy:CK, 6rxz:CK
7 7ajt:CJ 282 123 0.1364 0.1170 0.2683 0.014 7d4i:5G, 7d5s:5G, 7d5t:5G, 7d63:5G, 6ke6:5G, 6lqp:5G, 6lqq:5G, 6lqr:5G, 6lqs:5G, 6lqt:5G, 6lqu:5G, 6lqv:5G, 7suk:SM, 5wlc:SM, 5wyj:MB, 5wyk:MB, 6zqa:CJ, 6zqb:CJ, 6zqc:CJ, 6zqf:CJ, 6zqg:CJ
8 7aju:CJ 256 123 0.1364 0.1289 0.2683 0.015 6zqd:CJ, 6zqe:CJ
9 7uoo:v 293 211 0.1860 0.1536 0.2133 0.089 5a53:C, 7bt6:v, 7btb:v, 6ft6:v, 3jct:v, 6m62:v, 7oh3:v, 7ohq:v, 7oht:v, 7ug6:v, 7uqb:v, 7uqz:v, 7v08:v
10 8ahc:B 114 69 0.0868 0.1842 0.3043 3.7 8a7i:A, 8a7i:B, 8ahc:A, 6bqa:A, 5e9v:A, 5e9v:B, 5eu1:A, 5eu1:B, 5f1h:A, 5f1h:B, 5f1l:A, 5f1l:B, 5f25:A, 5f25:B, 5f2p:A, 5f2p:B, 6hm0:A, 6hm0:B, 5i40:A, 5i7x:A, 5i7y:A, 5igm:A, 5igm:B, 5ign:A, 5ign:B, 5ji8:A, 5mky:A, 4nqn:A, 5twx:A, 5twx:B, 5twx:D, 5twx:C, 4uit:A, 4uiu:A, 4uiv:A, 4uiw:A, 6v0s:A, 6v0s:B, 6v0x:A, 6v14:A, 6v1b:A, 6v1b:B, 4xy8:A, 6y7h:A, 6y7h:B, 6y7i:A, 6y7i:B, 6y7j:A, 6y7j:B, 6y7k:A, 6y7l:A, 6yqr:AAA, 6yqs:AAA, 6yqw:A, 4yy6:A, 4yyd:A, 4yyg:A, 4yyh:A, 4yyh:B, 4yyi:A, 4yyi:B, 4yyi:D, 4yyi:E, 4yyj:A, 4yyj:B, 4yyj:D, 4yyj:E, 4yyk:A, 4yyk:B, 4yyk:D, 4yyk:E, 4z6h:A, 4z6h:B, 4z6i:A, 4z6i:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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