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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPAELQEGMRFAQIEVNMGQWGVFHFDAQLISI
SERKVIDGKNETITTPRLSFRFLNVSPTVERQLQRIIFSLEREAREKADKV

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5y6g:A 131 131 1.0000 1.0000 1.0000 4.76e-96
2 5y6f:A 226 131 0.8779 0.5088 0.8779 2.58e-74
3 6rm3:LI0 216 71 0.1679 0.1019 0.3099 1.0
4 3qyq:A 273 73 0.1756 0.0842 0.3151 1.3 3qyq:B
5 3u1i:B 168 44 0.1298 0.1012 0.3864 1.5 3u1i:D, 3u1j:B
6 3kyf:A 231 126 0.2290 0.1299 0.2381 3.1
7 6jb1:B 1366 91 0.1832 0.0176 0.2637 4.3 6jb1:D, 6jb1:F, 6jb1:H, 7wit:A, 5yw7:B, 5ywd:B
8 6n1a:A 386 90 0.1832 0.0622 0.2667 5.1 6n1b:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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