Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QRKDSHKEVERRRRENINTAINVLSDLLPVRESSKAAILACAAEYIQKLKETDEANIEKWTLQKLLS

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ow1:B 116 67 1.0000 0.5776 1.0000 4.00e-43 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
2 1an4:A 65 60 0.3582 0.3692 0.4000 8.02e-08 1an4:B
3 8ia3:E 111 60 0.3582 0.2162 0.4000 4.91e-07 8ia3:A, 8ia3:B, 8ia3:F
4 7d8t:A 199 55 0.3433 0.1156 0.4182 3.38e-06 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
5 7xi4:A 283 55 0.2836 0.0671 0.3455 1.36e-04 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
6 5nj8:D 134 55 0.2836 0.1418 0.3455 1.62e-04
7 4zpr:A 235 54 0.2687 0.0766 0.3333 2.21e-04
8 1hlo:A 80 48 0.2687 0.2250 0.3750 2.30e-04
9 5eyo:C 88 67 0.3284 0.2500 0.3284 3.11e-04 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
10 7xi3:A 287 53 0.2537 0.0592 0.3208 8.50e-04
11 8osk:M 316 62 0.2687 0.0570 0.2903 0.002 4h10:B, 8osl:M, 8osl:O
12 5gnj:B 77 47 0.2836 0.2468 0.4043 0.002 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
13 1am9:C 82 56 0.2687 0.2195 0.3214 0.009 1am9:D, 1am9:A, 1am9:B
14 8osl:N 290 49 0.2090 0.0483 0.2857 0.012 4h10:A, 8osk:N, 8osl:P
15 1a0a:A 63 60 0.2537 0.2698 0.2833 0.017 1a0a:B
16 7f2f:B 94 61 0.2985 0.2128 0.3279 0.039 7f2f:A
17 1nlw:A 79 61 0.2239 0.1899 0.2459 0.23 1nlw:D
18 7xi3:B 314 49 0.2537 0.0541 0.3469 0.31 7xhv:B, 7xi4:B
19 2ypa:A 67 44 0.2537 0.2537 0.3864 0.47 2ypb:A
20 6uij:A 620 33 0.1791 0.0194 0.3636 0.94 9cbf:A, 9cbg:A, 9cbi:A, 9cbj:A, 6uhv:A, 6uii:A, 6uil:A, 6uim:A
21 1a59:A 377 49 0.2090 0.0371 0.2857 1.1
22 7sgg:A 644 33 0.1791 0.0186 0.3636 1.2 9cbh:A, 7kuq:A, 7kur:A, 7kus:A, 7kut:A, 7kuv:A, 7sgi:A, 7sgj:A, 7sgk:A, 5td7:A, 7u3m:A, 7u59:A, 7u69:A, 7u6a:A, 7u6b:B, 6ufn:A, 6ufo:A, 6uhu:A, 6vnq:A, 6wbq:A, 6wdv:A, 6wdw:A, 6wdx:A, 6wdy:A
23 3k2s:A 243 23 0.1791 0.0494 0.5217 1.3 6cch:A, 3k2s:B, 7rsc:D, 7rsc:E, 7rse:D, 7rse:E, 6w4e:D
24 8osb:B 66 50 0.2388 0.2424 0.3200 1.7
25 2a92:C 318 50 0.2090 0.0440 0.2800 2.0 2a92:A, 2a92:B, 2a92:D, 2a94:A, 2aa3:A, 2aa3:B, 2aa3:C, 2aa3:D, 4b7u:A, 5hru:A, 5hru:B, 5hto:A, 5hto:B, 5hto:D, 5hto:E, 1oc4:A, 1oc4:B, 4plz:A, 1t24:A, 1t25:A, 1t26:A, 1t2c:A, 1t2d:A, 6txr:A, 6txr:B, 6txr:C, 6txr:D, 3zh2:A, 3zh2:B, 3zh2:C, 3zh2:D
26 5sy7:B 276 62 0.2388 0.0580 0.2581 2.4
27 2w31:A 152 43 0.2090 0.0921 0.3256 4.0 2w31:B
28 5zt7:A 254 53 0.1940 0.0512 0.2453 4.4 6jv6:A, 5zt7:B, 5zta:A, 5zta:B
29 5i50:B 96 49 0.2239 0.1562 0.3061 6.4 5i50:A, 1nkp:A, 1nkp:D
30 7n4y:B 2455 29 0.1940 0.0053 0.4483 6.8 7n4y:A
31 1cgt:A 684 18 0.1493 0.0146 0.5556 8.3 1cgu:A, 3cgt:A, 4cgt:A, 5cgt:A, 6cgt:A, 7cgt:A, 8cgt:A, 9cgt:A
32 7ohy:b 375 39 0.2090 0.0373 0.3590 8.7
33 7jw9:A 378 48 0.1940 0.0344 0.2708 9.6 7jw9:B, 7jw9:C, 7jw9:D, 7jyb:A, 7jyb:C, 7jyb:E, 7k14:A, 7k14:B, 7k14:C, 7k14:D, 7k14:E, 7k14:G, 7k64:A, 7k64:C, 7k64:E

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417