Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINETNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEI

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kik:A 94 80 1.0000 0.8404 0.9875 5.48e-51 4c31:B, 4c31:E, 3kik:B, 3kik:D, 3kik:C, 3kjl:A, 3kjl:B, 3kjl:C, 3kjl:D, 4mbe:F, 4mbe:C
2 7mq8:NH 1066 46 0.1899 0.0141 0.3261 1.1 7mqa:NH
3 1xpl:A 389 66 0.2152 0.0437 0.2576 1.2 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
4 5e3x:A 489 32 0.1519 0.0245 0.3750 2.6
5 5hyh:A 287 45 0.1646 0.0453 0.2889 2.6 5hyg:A
6 6y3z:P 348 72 0.2405 0.0546 0.2639 4.6
7 2a81:A 235 36 0.1392 0.0468 0.3056 4.9
8 5j6f:A 352 32 0.1266 0.0284 0.3125 5.1 5j6f:B
9 4e0u:A 408 66 0.2785 0.0539 0.3333 5.2 4e0u:B, 7xvj:A, 7xvj:B, 7xvj:C, 7xvj:D, 7y3v:A, 7y3v:B, 7y3v:C, 7y3v:D
10 4b7f:A 515 41 0.1392 0.0214 0.2683 6.5 4b7f:B, 4b7f:C, 4b7f:D, 4b7g:A, 4b7g:B, 4b7g:C, 4b7g:D, 4b7h:A, 4b7h:B, 4b7h:C, 4b7h:D
11 6eck:B 532 21 0.1139 0.0169 0.4286 7.7 6ech:A, 6ech:B, 6ech:C, 6ech:D, 6eck:A, 4ima:A, 4ip7:A, 4ip7:B, 4ip7:D, 8tbs:B, 8tbs:C, 8tbs:E, 8tbs:F, 8tbs:G, 8tbs:H, 8tbt:A, 8tbt:B, 8tbt:C, 8tbt:D, 8tbu:A, 8tbu:D, 8tbu:F, 8tbu:H, 2vgb:A, 2vgb:C, 2vgb:D, 2vgf:A, 2vgf:C, 2vgf:D, 2vgg:A, 2vgg:C, 2vgg:D, 2vgi:A, 2vgi:C, 2vgi:D, 8xfd:A, 8xfd:B, 8xfd:C, 8xfd:D
12 8twu:A 403 60 0.1899 0.0372 0.2500 9.4 8hny:A, 8hnz:A, 8ho0:A, 8ho1:A, 7s3j:A, 7s3j:B, 7s3t:A, 6vxv:A, 6vza:A, 6vzb:A, 6w0s:A, 6w0s:B, 6xai:A, 6xai:B, 6xaj:A, 6xak:A, 6xak:B, 6xal:A, 6xam:A
13 8v83:b 423 27 0.1266 0.0236 0.3704 9.9 6elz:b, 6em1:b, 6em5:b, 7ohp:b, 7ohr:b, 7ohs:b, 7ohu:b, 7ohv:b, 8v84:b

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417