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BioLiP
>protein
QQVWKLVIITEEILLKKVSKIIKEAGASGYTVLAAAGEGSAYSNIKFEVLTASRELADQIQDKVVAKYFDDYSCITYIST
VEALRAHKF

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mmo:A 91 89 1.0000 0.9780 1.0000 3.10e-60 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
2 6ntb:C 104 102 1.0000 0.8558 0.8725 8.65e-57 6mm2:A, 6ntb:A, 6ntb:B
3 7r30:B 102 87 0.5506 0.4804 0.5632 7.26e-30 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 7cyf:D 109 98 0.5506 0.4495 0.5000 2.94e-28 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
5 7o4x:A 103 39 0.1685 0.1456 0.3846 0.097
6 1z82:A 312 59 0.1685 0.0481 0.2542 0.13 1z82:B
7 5xkt:A 199 26 0.1011 0.0452 0.3462 2.7 5xkt:B
8 6n7e:C 302 54 0.2022 0.0596 0.3333 3.7 6n7e:B
9 4wa6:D 415 25 0.1124 0.0241 0.4000 4.7 4w4u:D
10 4fjc:E 434 25 0.1124 0.0230 0.4000 4.7 3m99:A, 3mhh:A
11 3mhs:A 455 25 0.1124 0.0220 0.4000 4.8 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
12 2e87:A 356 64 0.1685 0.0421 0.2344 5.2
13 1ovm:A 535 45 0.1798 0.0299 0.3556 6.5 1ovm:B, 1ovm:C, 1ovm:D
14 5kca:A 807 35 0.1348 0.0149 0.3429 6.9 5kc8:A
15 4eo3:A 321 21 0.1011 0.0280 0.4286 8.3 4eo3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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