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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QQRSTQLKFYDGGNRQSISGIRATIFGATGFMGPYIGAALGYIGSDVIFPHNHVYAYDDYVKELKLCAGSGQSYIMRHFN
YDDDNMYDMAIKNSNVVINLVGSRLQNKNFQKAAYANIHVAKKIAEACARNPNVRRLIHFSAAGADTKSPSPDLHTKFHG
EEAVLNAFPNATIFRPCTVYGMQDYFIRHWIKERDWWYHFNIVTDDCTAKRQPILINDVAQCVLNALKLQESAGQIYELG
GPHVYSRLEVFEMLANLSGRPPKLAHIPHDIALKITQNFYNWEFFNMEKVIKDKLDLIVTGKHKTISDLYVQPVSFPQGA
EQFIDDVRYRGVETHDNLEK

The query sequence (length=340) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8gym:a9 340 340 1.0000 1.0000 1.0000 0.0 8b6f:A1, 8bqs:A1, 8gym:A9, 8gzu:a9, 8gzu:A9, 7tgh:A9
2 7aqr:P 332 316 0.3176 0.3253 0.3418 2.07e-42 7a23:T, 7a24:T, 7ar7:P, 7ar8:P, 7arb:P, 8bee:P, 8bpx:P, 8bq5:P, 8bq6:P
3 8b9z:P 377 259 0.2941 0.2653 0.3861 4.16e-41 8ba0:P, 8esw:A9, 8esz:A9
4 7arc:P 347 338 0.3029 0.2968 0.3047 9.25e-41 7ard:P
5 8e73:A9 330 315 0.2912 0.3000 0.3143 1.44e-40 6x89:A9
6 8ud1:1P 342 260 0.2706 0.2690 0.3538 1.17e-39 5gpn:p, 5gup:L, 8ueo:1P, 8uep:1P, 8ueq:1P, 8uer:1P, 8ues:1P, 8uet:1P, 8ueu:1P, 8uev:1P, 8uew:1P, 8uex:1P, 8uey:1P, 8uez:1P, 8ugh:1P, 8ugi:1P, 8ugj:1P, 8ugn:1P, 8ugn:5P, 8ugr:1P, 8ugr:5P, 7v2c:J, 7v2e:J, 7v2h:J, 7v2k:J, 7v2r:J, 7v31:J, 7v33:J, 7vb7:J, 7vbn:J, 7vbz:J, 7vxp:J, 7vy8:J, 7vyf:J, 7vyn:J, 7vzv:J, 7vzw:J, 7w0r:J, 7w0y:J, 7w1t:J, 7w1u:J, 7w1v:J, 7w1z:J, 7w20:J, 7w2r:J, 7w2u:J, 7w2y:J, 7w31:J, 7w32:J, 7w35:J, 7w4c:J, 7w4d:J, 7w4e:J, 7w4f:J, 7w4g:J
7 5lnk:d 314 253 0.2618 0.2834 0.3518 2.02e-38 6q9d:A9, 6qa9:A9, 6qbx:A9, 6qc2:A9, 6qc3:A9, 6qc4:A9, 6qc5:A9, 6qc6:A9, 6qc7:A9, 6qc8:A9, 6qc9:A9, 6qca:A9, 6qcf:A9, 7r45:P, 7r46:P, 7r47:P, 7r48:P, 7r4c:P, 7r4d:P, 7r4f:P, 7r4g:P, 7zd6:d, 7zdj:d, 7zdp:d, 6zk9:d, 6zkd:d, 6zke:d, 6zkf:d, 6zkh:d, 6zki:d, 6zkj:d, 6zkl:d, 6zkm:d, 6zkn:d, 6zkp:d, 6zkq:d, 6zkr:d, 6zks:d, 6zkt:d, 6zku:d, 6zkv:d
8 8q0a:P 342 260 0.2618 0.2602 0.3423 2.28e-37 7dgq:R, 7dgr:R, 7dgs:R, 7dgz:R, 7dh0:R, 7dkf:R2, 8q0f:P, 8q0j:P, 8q0m:P, 8q0o:P, 8q0q:P, 8q1p:P, 8q1u:P, 8q1y:P, 8q25:P, 8q45:P, 8q46:P, 8q47:P, 8q48:P, 8q49:P, 8q4a:P, 7qsd:P, 7qsk:P, 7qsl:P, 7qsm:P, 7qsn:P, 7qso:P, 7r41:P, 7r42:P, 7r43:P, 7r44:P, 7zdh:d, 7zdm:d, 7zeb:d, 6zkc:d, 6zkg:d, 6zkk:d, 6zko:d
9 7v2d:J 297 252 0.2676 0.3064 0.3611 6.88e-37 7v2f:J, 7v30:J, 7v32:J, 7v3m:J, 7vwj:J, 7vxu:J, 7vya:J, 7vyh:J, 7vz1:J, 7w00:J, 7w0h:J, 7w1o:J, 7w1p:J, 7w2k:J, 7w2l:J, 7w4j:J, 7w4k:J, 7w4l:J, 7w4m:J, 7w4n:J, 7w4q:J
10 7b93:P 342 314 0.2971 0.2953 0.3217 2.98e-35 8c2s:P, 8ca3:P, 8ca5:P, 6g2j:P, 8iao:P, 8iap:P, 8ib4:P, 8ib5:P, 8ib9:P, 8iba:P, 8ibd:P, 8ibe:P, 8ic2:P, 8ic3:P, 8olt:P, 8om1:P, 7psa:P, 8pw5:P1, 8pw6:P1, 8pw7:P1, 8rgp:P, 8rgr:P, 6zr2:P, 6ztq:P
11 8rgq:P 314 250 0.2529 0.2739 0.3440 1.50e-34 7ak5:P, 6g72:P, 8rgt:P
12 7b0n:P 355 312 0.2647 0.2535 0.2885 1.75e-33 6gcs:E, 7o6y:E, 7o71:E, 6rfr:E, 6rfs:E, 6y79:E, 6yj4:P
13 7ak6:P 288 235 0.2471 0.2917 0.3574 1.10e-30
14 5xtb:J 337 240 0.2382 0.2404 0.3375 1.94e-30 5xtd:J, 5xth:J, 5xti:J, 5xti:BJ
15 6rfq:E 263 247 0.2206 0.2852 0.3036 3.64e-27
16 8iuf:A9 484 276 0.2382 0.1674 0.2935 1.22e-25 8j9h:A9, 8j9i:A9, 8j9j:A9
17 7zm7:E 353 308 0.2412 0.2323 0.2662 3.54e-25 7zmb:E, 7zmg:E
18 6zll:A 321 271 0.2029 0.2150 0.2546 1.42e-04 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
19 3e7g:C 423 48 0.0441 0.0355 0.3125 0.15 4cx7:A, 4cx7:D, 4cx7:B, 4cx7:C, 3e7g:A, 3e7g:B, 3e7g:D, 3ej8:A, 3ej8:B, 3ej8:C, 3ej8:D, 4nos:A, 4nos:B, 4nos:C, 4nos:D, 1nsi:A, 1nsi:B, 1nsi:C, 1nsi:D, 2nsi:A, 2nsi:B, 2nsi:C, 2nsi:D
20 3e65:B 421 49 0.0412 0.0333 0.2857 0.38 2bhj:A, 1df1:A, 1df1:B, 1dwv:A, 1dwv:B, 1dww:A, 1dww:B, 1dwx:A, 1dwx:B, 3dwj:A, 3dwj:B, 3e65:A, 3e67:A, 3e67:B, 3e68:A, 3e68:B, 3e6l:A, 3e6l:B, 3e6n:A, 3e6n:B, 3e6o:A, 3e6o:B, 3e6t:A, 3e6t:B, 3e7i:A, 3e7i:B, 3e7m:A, 3e7m:B, 3e7t:A, 3e7t:B, 3eai:A, 3eai:B, 3ebd:A, 3ebd:B, 3ebf:A, 3ebf:B, 4js9:A, 4js9:B, 1jwj:A, 1jwj:B, 1jwk:A, 1jwk:B, 1m8d:A, 1m8d:B, 1m8e:A, 1m8e:B, 1m8h:A, 1m8h:B, 1m8i:A, 1m8i:B, 1m9t:A, 1m9t:B, 1n2n:A, 1n2n:B, 1noc:A, 1nod:A, 1nod:B, 2nod:A, 2nod:B, 3nod:A, 3nod:B, 3nqs:A, 3nqs:B, 3nw2:A, 3nw2:B, 1qom:A, 1qom:B, 1qw4:A, 1qw4:B, 1qw5:A, 1qw5:B, 1r35:A, 1r35:B, 4ux6:B, 1vaf:A, 1vaf:B, 2y37:A, 2y37:B
21 5l3z:A 280 74 0.0500 0.0607 0.2297 0.43 5l4l:A
22 8r2j:B 275 52 0.0471 0.0582 0.3077 1.0 8r2j:A
23 8ic6:B 855 144 0.1029 0.0409 0.2431 1.1 8ic6:A, 8ic7:B, 8ic7:A
24 7o7s:A 1276 121 0.0824 0.0219 0.2314 1.6
25 3c1t:B 326 124 0.0882 0.0920 0.2419 1.7 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
26 2ort:A 298 42 0.0353 0.0403 0.2857 2.4 1dd7:A, 2orr:A, 2ors:A
27 1nos:A 323 42 0.0353 0.0372 0.2857 3.3 2nos:A, 2oro:A, 2orp:A, 2orq:A
28 3wmw:B 278 49 0.0500 0.0612 0.3469 3.6 3wmw:A
29 7eps:A 310 49 0.0500 0.0548 0.3469 3.6 7eps:B, 7eps:C, 7eps:D, 3wmx:A, 3wmx:B, 3wmx:C, 3wmx:D
30 8bx8:A 4453 83 0.0647 0.0049 0.2651 4.2 7k58:A, 7k5b:A, 7kek:A
31 8fgw:A 1081 50 0.0500 0.0157 0.3400 4.4
32 5e12:A 202 58 0.0588 0.0990 0.3448 4.8 5e0y:A
33 3rkr:A 221 59 0.0471 0.0724 0.2712 5.3 3rkr:B
34 4fuv:A 213 37 0.0471 0.0751 0.4324 5.4
35 1b76:A 442 34 0.0294 0.0226 0.2941 7.0 1ati:B, 1b76:B, 1ggm:A, 1ggm:B
36 7epr:B 310 49 0.0500 0.0548 0.3469 7.2 7epr:A, 7epr:C, 7epr:D
37 6bi4:C 311 70 0.0529 0.0579 0.2571 7.8 6bi4:B, 6bi4:D, 6bi4:A
38 6k0g:A 335 73 0.0706 0.0716 0.3288 8.4 6k0h:A, 6k0i:A
39 5g4l:A 265 36 0.0412 0.0528 0.3889 8.5 5g4l:B
40 4yrb:C 249 82 0.0618 0.0843 0.2561 9.1 4yrb:A, 4yrb:D, 4yrb:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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