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BioLiP
>protein
QPPMVPHSVANYQVTKNVNQCLNCHSPENSRLSGATRISPTHFMDRDGKVPRRYFCLQCHVS

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jni:A 62 62 1.0000 1.0000 1.0000 7.81e-43
2 1ogy:B 126 66 0.5484 0.2698 0.5152 7.48e-19 1ogy:D, 1ogy:F, 1ogy:H, 1ogy:J, 1ogy:L, 1ogy:N, 1ogy:P
3 3ml1:B 109 66 0.5000 0.2844 0.4697 2.03e-15 3o5a:B
4 1hfe:L 396 45 0.2419 0.0379 0.3333 0.059 8bj7:A, 8bj8:A, 1e08:A, 1gx7:A, 1hfe:M, 6sg2:AAA
5 6qyc:B 608 54 0.2581 0.0263 0.2963 0.46 6qyc:A, 6qyc:C, 6r2q:C
6 1sp3:A 436 22 0.1774 0.0252 0.5000 3.1
7 5gll:A 331 23 0.1613 0.0302 0.4348 3.4 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B
8 4lmh:D 695 22 0.1452 0.0129 0.4091 3.4 4lmh:A, 4lmh:B, 4lmh:C
9 1qdb:A 473 53 0.2419 0.0317 0.2830 3.9 1qdb:B, 1qdb:C
10 1qdb:A 473 30 0.1613 0.0211 0.3333 7.2 1qdb:B, 1qdb:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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