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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQR
LVYQFVHP

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yo5:C 88 88 1.0000 1.0000 1.0000 3.93e-61
2 8bzm:H 88 83 0.4773 0.4773 0.5060 3.68e-25 8bzm:B
3 1dux:C 86 84 0.5000 0.5116 0.5238 1.17e-24 1dux:F
4 4uuv:A 96 84 0.5227 0.4792 0.5476 6.30e-23 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
5 6da1:B 138 85 0.5114 0.3261 0.5294 9.12e-20 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
6 3jtg:A 95 83 0.3977 0.3684 0.4217 1.23e-19
7 4bqa:A 132 85 0.5114 0.3409 0.5294 1.80e-19
8 8e67:F 97 82 0.4545 0.4124 0.4878 7.85e-19 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
9 7jsa:J 88 83 0.4659 0.4659 0.4940 9.62e-18 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
10 1hbx:G 112 65 0.4091 0.3214 0.5538 1.33e-17 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
11 3zp5:A 92 83 0.4659 0.4457 0.4940 4.17e-17
12 6vgd:A 98 83 0.4545 0.4082 0.4819 4.86e-17 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
13 1awc:A 110 84 0.4545 0.3636 0.4762 1.42e-16
14 8eo4:F 95 87 0.3750 0.3474 0.3793 1.28e-10 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 2d6f:D 522 42 0.1705 0.0287 0.3571 0.61 2d6f:C
16 2irf:H 109 30 0.1364 0.1101 0.4000 2.1 2irf:I, 2irf:J, 2irf:K, 2irf:L, 2irf:G
17 3be7:A 398 64 0.1932 0.0427 0.2656 3.4 3be7:E, 3be7:B, 3be7:D, 3be7:C, 3be7:F, 3be7:G, 3be7:H, 3dug:A, 3dug:B, 3dug:C, 3dug:D, 3dug:E, 3dug:F, 3dug:G, 3dug:H
18 7w7g:A 1528 50 0.1932 0.0111 0.3400 4.2
19 4uyq:A 143 20 0.1023 0.0629 0.4500 5.5
20 7kso:A 395 55 0.1364 0.0304 0.2182 6.6 7ksr:A, 7ktp:A
21 6adi:A 418 13 0.0909 0.0191 0.6154 7.8 6adi:B, 5h3e:B, 5h3f:A, 5h3f:B, 5i95:A, 5i96:A, 5i96:B, 4ja8:A, 4ja8:B, 5svn:A, 5svn:B, 5svo:A, 5svo:B, 6vfz:A, 6vfz:B
22 4mmh:A 637 34 0.1364 0.0188 0.3529 8.2 4mmi:A
23 8ulg:B 824 24 0.1023 0.0109 0.3750 9.3 7jsn:B, 6mzb:B, 8ufi:B, 8ugb:B, 8ugs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417