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BioLiP
>protein
QPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLEL
ITRLHQYIFSHILRYCVLPLNVSTLDIDFKFMEDIEKSEKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTD
LTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHSSAEKRKAKWESLQNKQILVPELCAIHPI
PASLWRKAVCLPSILYRLHC

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ngf:A 260 262 0.9885 0.9885 0.9809 0.0 4ngf:B, 4ngf:C, 4ngf:D, 4nha:A
2 7xw2:A 725 298 1.0000 0.3586 0.8725 1.59e-178
3 5zal:A 1314 298 1.0000 0.1979 0.8725 1.17e-173 2eb1:A, 2eb1:B, 2eb1:C, 4ngd:A, 5zam:A
4 7yym:A 1281 288 0.9154 0.1858 0.8264 2.41e-155 4ngb:A, 4ngc:A, 4ngg:A, 4nh3:A, 4nh5:A, 4nh6:A, 7yyn:A, 7zpi:A, 7zpj:A, 7zpk:A
5 8dg5:A 1635 296 0.5115 0.0813 0.4493 1.23e-73 8dg7:A
6 8dfv:A 1664 296 0.5115 0.0799 0.4493 1.28e-73
7 8dga:A 1629 296 0.5115 0.0816 0.4493 1.79e-73
8 8hf0:A 1561 264 0.2500 0.0416 0.2462 8.39e-14 8hf0:D, 8hf1:A, 8hf1:D, 8hf1:G, 7w0a:A, 7w0a:E, 7w0c:A, 7w0d:A, 7w0e:A, 7w0f:A
9 7w0b:A 1586 264 0.2500 0.0410 0.2462 8.73e-14 7w0d:F
10 7v6c:A 1540 263 0.2308 0.0390 0.2281 1.11e-11
11 7eld:A 1137 115 0.1538 0.0352 0.3478 9.75e-10 7ele:A
12 7vg3:A 860 108 0.1231 0.0372 0.2963 1.76e-05 7vg2:A
13 2l5d:A 134 100 0.1077 0.2090 0.2800 1.02e-04 3o3i:X, 3o6e:X, 3o7v:X, 2xfm:A
14 7kx9:A 734 61 0.0846 0.0300 0.3607 0.002 7kx7:A, 7yfq:A, 7yg6:A
15 6kr6:A 713 61 0.0846 0.0309 0.3607 0.019
16 5guh:A 759 66 0.0885 0.0303 0.3485 0.13
17 7yfx:A 746 60 0.0731 0.0255 0.3167 0.80 7yfy:A, 7ygn:A
18 8r3z:A 755 32 0.0538 0.0185 0.4375 1.0
19 3ss7:X 437 85 0.0808 0.0481 0.2471 1.1 3ss9:X
20 5bv9:A 701 85 0.0885 0.0328 0.2706 1.9 5cvy:A, 5vma:A
21 4lna:A 269 162 0.1423 0.1375 0.2284 2.9
22 7kw6:A 697 106 0.1154 0.0430 0.2830 5.3
23 2p4s:A 282 58 0.0692 0.0638 0.3103 5.4 2p4s:B, 2p4s:C
24 8om5:A 828 125 0.1231 0.0386 0.2560 7.1 8omo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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