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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKGTDAKVKLIKQELDKYKNAVTELQLLMQSTPATFLGFLLG
VGSAIASGVAVCKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSISNIETVIEF
QQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQL
PLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCN
VDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQE
GKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFI

The query sequence (length=443) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8phi:F 453 445 0.9865 0.9647 0.9820 0.0 9bjm:A, 5ea3:F, 5ea4:F, 5ea5:F, 5ea6:F, 6eag:F, 6eah:C, 6eak:F, 8kg5:A, 8kg5:C, 8kg5:B, 3kpe:A, 7kqd:F, 5kww:F, 6ntx:B, 6vkc:F, 6vkd:F, 6vke:F
2 3kpe:B 35 24 0.0542 0.6857 1.0000 1.70e-08
3 8uuq:C 372 78 0.0451 0.0538 0.2564 0.002 9at8:F, 8uuq:G, 8uuq:E, 5yzc:B, 5yzd:C
4 6nro:A 49 45 0.0293 0.2653 0.2889 0.020
5 8pmr:B 210 61 0.0384 0.0810 0.2787 5.0 8pms:D, 6yge:B, 6yge:A, 6ygf:A, 6ygg:A, 6ygg:B
6 3dm5:A 416 78 0.0587 0.0625 0.3333 6.8 3dm5:B
7 8c5d:A 209 71 0.0451 0.0957 0.2817 7.0 8c5d:B, 1glp:A, 1glp:B, 1glq:A, 1glq:B, 2glr:A, 2glr:B, 1gsy:A, 1gsy:B, 1gti:A, 1gti:B, 1gti:C, 1gti:D, 1gti:E, 1gti:F, 3o76:A, 3o76:B, 2oa7:A, 2oa7:B, 2oac:A, 2oac:B, 2oad:A, 2oad:B
8 8b4o:A 442 44 0.0339 0.0339 0.3409 7.2
9 6brl:A 502 68 0.0406 0.0359 0.2647 8.8
10 8gix:E 991 55 0.0339 0.0151 0.2727 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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