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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QMLDESARLRLEARGELQALRIQRYFMDAFQYGKGFSRQILFLRDQAQKRFLDAYDLREDLTRQVRTALAANPEVLGLYV
VFEPNALDGKDELFVDQPALGSNDKGRFSLYWAQATPGQLESESMIESELADTSSGPSGAAYNAWYTCPKESGQPCVLDP
YFDKVGERQLLMTSIAFPLELDGKVIGVMGLDINLSNLQALSEQGNRELYDGVGQVGILSPAGLFAGNSRDAGLLGKNLA
KADPQHAGELLQLLAAGKSRLFNENDDLKVLQPLQPIPGAKPWGVLLEVPKSALLG

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fu4:A 297 296 1.0000 0.9966 1.0000 0.0 6fu4:B, 6fu4:C, 6fu4:D
2 6f9g:D 262 288 0.5135 0.5802 0.5278 7.02e-101 6f9g:A, 6f9g:B, 6f9g:C, 6f9g:E
3 7prq:B 316 298 0.2500 0.2342 0.2483 2.41e-30 7prq:A, 7prr:A, 7prr:B
4 6d8v:A 269 148 0.1520 0.1673 0.3041 9.79e-13
5 6py3:B 238 154 0.1318 0.1639 0.2532 0.003 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A
6 6w3o:B 252 74 0.0811 0.0952 0.3243 0.018 6w3o:A, 6w3p:A, 6w3p:B, 6w3r:A, 6w3r:B, 6w3s:A, 6w3s:B, 6w3t:A, 6w3t:B, 6w3v:A, 6w3v:B, 6w3x:A, 6w3x:B, 6w3y:A, 6w3y:B, 4xmr:A, 4xmr:B
7 8bmv:B 249 252 0.2061 0.2450 0.2421 0.095 8bmv:A
8 4wy9:A 285 130 0.1047 0.1088 0.2385 0.11
9 5lt9:B 253 54 0.0541 0.0632 0.2963 0.36 5lt9:A, 5lto:A, 5lto:B
10 4c9f:D 134 140 0.1182 0.2612 0.2500 0.41 4c9f:A, 4c9f:B, 4c9f:C, 4caj:A, 4caj:B, 4caj:C, 4caj:D, 3zhg:A, 3zhg:B, 3zhg:C, 3zhg:D
11 5ave:A 252 82 0.0845 0.0992 0.3049 1.3 5avf:A, 5avf:B, 3c8c:A, 3c8c:B, 6iov:A, 6iov:B
12 6d24:A 502 64 0.0709 0.0418 0.3281 2.1 5aq1:A, 5aq1:B, 5aq1:C, 6d24:B, 6d24:C, 6d24:D
13 8dgd:A 167 40 0.0507 0.0898 0.3750 2.2
14 6raw:5 576 89 0.0777 0.0399 0.2584 2.5
15 5ah5:A 789 38 0.0405 0.0152 0.3158 3.8 5ah5:B
16 5a29:A 548 17 0.0372 0.0201 0.6471 5.6
17 7ukn:A 1059 99 0.1014 0.0283 0.3030 5.9
18 5oc2:A 441 50 0.0642 0.0431 0.3800 9.7 5oc2:B, 5oc3:A, 5oc3:B, 4wct:A, 4wct:B, 4xwz:A, 4xwz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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