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BioLiP
>protein
QLWHFILELLRKEEYQGVIAWQGDYGEFVIKDPDEVARLWGVRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFN
FN

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jsa:J 88 82 1.0000 0.9318 1.0000 4.90e-58 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
2 3zp5:A 92 81 0.6341 0.5652 0.6420 5.05e-35
3 6vgd:A 98 82 0.6220 0.5204 0.6220 1.17e-33 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
4 4bqa:A 132 79 0.6098 0.3788 0.6329 5.50e-32
5 6da1:B 138 79 0.6098 0.3623 0.6329 6.24e-32 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
6 1awc:A 110 79 0.5488 0.4091 0.5696 1.00e-27
7 1dux:C 86 79 0.5610 0.5349 0.5823 1.02e-27 1dux:F
8 4uuv:A 96 79 0.5244 0.4479 0.5443 2.15e-26 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
9 1hbx:G 112 68 0.4634 0.3393 0.5588 1.53e-22 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
10 1yo5:C 88 82 0.4878 0.4545 0.4878 3.50e-17
11 8bzm:H 88 80 0.4634 0.4318 0.4750 4.55e-17 8bzm:B
12 8e67:F 97 79 0.4024 0.3402 0.4177 6.82e-17 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
13 3jtg:A 95 84 0.4268 0.3684 0.4167 6.54e-16
14 8eo4:F 95 84 0.3659 0.3158 0.3571 3.78e-07 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 8yhe:H 524 61 0.2195 0.0344 0.2951 0.24 8yhd:H
16 8z99:K 372 29 0.1341 0.0296 0.3793 0.44 8yhd:K, 8yhe:K, 8z4j:K, 8z4l:K, 8z9c:K, 8z9e:K
17 3k9t:A 422 57 0.2317 0.0450 0.3333 0.47
18 8z99:H 582 29 0.1341 0.0189 0.3793 0.51 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L
19 8z9e:H 553 29 0.1341 0.0199 0.3793 0.51
20 8he1:A 225 31 0.1220 0.0444 0.3226 1.3 8he2:A, 8he4:A, 8hf9:A
21 5ceo:A 269 26 0.1463 0.0446 0.4615 1.3 5cep:A, 5ceq:A, 8deg:A, 8our:A, 8ous:A, 8out:A, 5vo1:A, 5vo2:A
22 3vnq:A 497 63 0.2073 0.0342 0.2698 3.7 3vnr:A, 3vns:A
23 8jcu:3 765 61 0.2195 0.0235 0.2951 3.9 6b7h:A, 5cnk:A, 5cnm:A, 8jcv:3, 8jcw:3, 8jcx:3, 8jcy:3, 8jcz:3, 8jd0:3, 8jd1:3, 8jd2:3, 8jd3:3, 3sm9:A, 8tr0:A, 7wih:A, 7wih:B, 4xar:A
24 8tr2:A 745 61 0.2195 0.0242 0.2951 4.0 2e4u:A, 2e4u:B, 2e4v:A, 2e4v:B, 2e4w:A, 2e4w:B, 2e4x:A, 2e4x:B, 2e4y:A, 2e4y:B, 8tqb:A, 8tqb:B, 8tr0:B, 8tr2:B, 8trc:A, 8trc:B, 8trd:A, 8trd:B, 7wi6:A, 7wi6:B, 7wi8:A, 7wi8:B
25 3cis:G 292 34 0.1341 0.0377 0.3235 4.1 3cis:A, 3cis:B, 3cis:C, 3cis:D, 3cis:E, 3cis:F, 3cis:H
26 3s2e:A 340 17 0.1098 0.0265 0.5294 8.5 3s1l:A, 3s1l:B, 3s1l:C, 3s1l:D, 3s2e:B, 3s2e:C, 3s2e:D, 3s2e:E, 3s2e:F, 3s2e:G, 3s2e:H, 3s2f:A, 3s2f:B, 3s2f:C, 3s2f:D, 3s2f:E, 3s2f:F, 3s2f:G, 3s2f:H, 3s2g:A, 3s2g:B, 3s2g:C, 3s2g:D, 3s2g:E, 3s2g:F, 3s2g:G, 3s2g:H, 3s2i:A, 3s2i:B, 3s2i:C, 3s2i:D, 3s2i:E, 3s2i:F, 3s2i:G, 3s2i:H
27 6edt:M 159 39 0.1463 0.0755 0.3077 9.6 6ee8:M, 6eec:M, 7kif:M, 7kin:M, 6vvx:M, 6vvy:M, 6vvz:M, 6vw0:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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