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BioLiP
>protein
QLITVDEKLDITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSA
KEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSWNK

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dh0:G 123 116 0.9322 0.8943 0.9483 4.78e-81 7dkf:G2, 8ic2:Q, 8ic3:Q
2 8esw:S4 126 117 0.5424 0.5079 0.5470 1.87e-45
3 7arc:Q 162 120 0.4576 0.3333 0.4500 2.81e-25 7ard:Q
4 4iwh:A 358 49 0.1186 0.0391 0.2857 0.13 4iwh:B, 4xxv:A, 4xxv:B
5 6u2a:A 358 48 0.1441 0.0475 0.3542 0.20 6ue4:A, 6ue4:B
6 8p23:B 715 36 0.1017 0.0168 0.3333 1.1 8p23:A, 8p27:A, 8p27:B, 8p28:A, 8p28:B, 8p28:C, 8p28:D, 8p2c:A, 8p2c:B, 8p2c:C, 8p2c:D, 8p2d:A, 8p2d:B, 8p2s:A, 8p2s:B, 8p39:A, 8p39:B
7 7shk:L 282 58 0.1525 0.0638 0.3103 3.3 7shl:L
8 5aa5:G 561 40 0.0932 0.0196 0.2750 4.7 5aa5:C, 5aa5:E, 5aa5:K, 5aa5:I, 5aa5:L
9 4pfu:B 542 84 0.1864 0.0406 0.2619 8.4 5hm4:B, 4pfu:A, 4pfw:A, 4pfw:B
10 3dy5:A 1002 39 0.1102 0.0130 0.3333 8.5 3dy5:C, 1u5u:A, 1u5u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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