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BioLiP
>protein
QLDALDAAERPGHLASAIADEIRAVLRSGDPIDHHRPLETLGLDSLMGLELRNRLEASLGITLPVALVWAYPTISDLATA
LCERMD

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qzi:E 86 86 1.0000 1.0000 1.0000 5.91e-57 7bdw:B, 6rcx:B
2 6d8i:A 79 61 0.2791 0.3038 0.3934 1.10e-06
3 5hv8:A 95 48 0.2326 0.2105 0.4167 6.49e-06
4 8cuy:A 1016 61 0.2442 0.0207 0.3443 2.01e-04
5 8ahq:C 78 76 0.2442 0.2692 0.2763 0.003 8ahq:D
6 5zk4:D 73 54 0.2209 0.2603 0.3519 0.006
7 6ltb:A 928 42 0.1977 0.0183 0.4048 0.006 6ltc:A, 6ltd:A, 6ltd:B
8 2vsq:A 1273 47 0.1860 0.0126 0.3404 0.035
9 2liw:A 99 83 0.2093 0.1818 0.2169 0.041
10 4zxh:A 1314 67 0.2442 0.0160 0.3134 0.088 4zxi:A
11 2k0x:A 86 37 0.1744 0.1744 0.4054 0.62 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
12 7arc:U 84 36 0.1744 0.1786 0.4167 0.62 7ard:U
13 6mfz:A 1789 38 0.1628 0.0078 0.3684 0.69 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
14 7ak6:U 88 55 0.1977 0.1932 0.3091 1.0 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
15 3hkz:D 264 81 0.2791 0.0909 0.2963 1.1 4ayb:D, 3hkz:O, 2pa8:D, 2pmz:D, 2pmz:S, 4v8s:AS, 4v8s:BD, 2waq:D, 2wb1:D, 2wb1:S, 2y0s:D, 2y0s:S
16 8aig:A 86 57 0.2326 0.2326 0.3509 1.3
17 5x2b:L 283 46 0.1628 0.0495 0.3043 1.5 5x2b:C, 5x2b:A, 5x2b:B, 5x2b:D, 5x2b:E, 5x2b:F, 5x2b:G, 5x2b:H, 5x2b:I, 5x2b:J, 5x2b:K
18 5mmi:F 193 40 0.1163 0.0518 0.2500 2.8 6eri:AF, 5h1s:H, 5mlc:G, 5mmm:F, 4v61:BH, 5x8p:F, 5x8t:F
19 8cg6:C 75 38 0.1977 0.2267 0.4474 2.8
20 8bee:U 87 55 0.1744 0.1724 0.2727 3.0 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
21 3dg6:A 366 75 0.2558 0.0601 0.2933 3.8 3dg3:A, 3dg7:A, 3dg7:B, 3dg7:C, 3dg7:D
22 8e73:AB 85 57 0.1860 0.1882 0.2807 5.3
23 6dfu:A 332 37 0.1744 0.0452 0.4054 5.4 6dfu:B
24 4yng:E 470 47 0.1860 0.0340 0.3404 5.4 8eq0:B, 8eq0:A, 4yng:A, 4yng:B, 4yng:C, 4yng:D, 4yng:F, 4yng:G, 4yng:H
25 7b0n:U 88 54 0.1860 0.1818 0.2963 5.8 6rfq:Q, 6rfr:Q, 6y79:Q
26 1o6e:B 232 44 0.1977 0.0733 0.3864 6.2 1o6e:A
27 5u89:A 1039 47 0.1744 0.0144 0.3191 6.5
28 5ijg:B 403 38 0.1744 0.0372 0.3947 6.9 5ijg:A
29 4ufc:B 788 44 0.1860 0.0203 0.3636 8.1 4ufc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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