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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASS
PCTVPLGVFEVEVKEGEVYVAGEKKLEHHHH

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4nbb:E 114 111 1.0000 0.9737 1.0000 1.10e-80 7buh:A, 7bui:D, 7bui:E, 2de5:D, 2de5:E, 2de5:F, 2de6:D, 2de6:E, 2de6:F, 2de7:D, 2de7:E, 2de7:F, 6llf:D, 6llf:E, 6llf:F, 6llh:D, 6llh:E, 6llh:F, 4nb8:D, 4nb8:E, 4nb8:F, 4nb9:D, 4nb9:E, 4nb9:F, 4nba:D, 4nba:E, 4nba:F, 4nbb:D, 4nbb:F, 4nbc:D, 4nbc:E, 4nbc:F, 4nbd:D, 4nbd:E, 4nbe:D, 4nbe:E, 4nbf:D, 4nbf:E, 4nbf:F, 4nbg:D, 4nbg:E, 4nbg:F, 4nbh:D, 4nbh:E, 4nbh:F, 1vck:A, 3vmg:D, 3vmg:E, 3vmg:F, 3vmh:D, 3vmh:E, 3vmh:F, 3vmi:D, 3vmi:E, 3vmi:F
2 2i7f:A 102 95 0.3243 0.3529 0.3789 2.59e-21 2i7f:B
3 3dqy:A 106 98 0.3604 0.3774 0.4082 2.23e-20 4emj:B
4 5bok:A 102 98 0.3333 0.3627 0.3776 6.72e-20
5 2qpz:A 103 98 0.3423 0.3689 0.3878 2.16e-19
6 2e4p:A 108 107 0.3784 0.3889 0.3925 3.84e-18 2e4p:B, 2e4q:A, 2e4q:C, 2yvj:B
7 1fqt:A 109 102 0.3423 0.3486 0.3725 1.23e-15 1fqt:B
8 3gce:A 104 100 0.3063 0.3269 0.3400 1.47e-12
9 6icn:A 344 115 0.2703 0.0872 0.2609 1.39e-09 6ick:A, 6ick:B, 6ick:C, 6icm:A, 6icm:B, 6icm:C, 6icn:B, 6icn:C, 6ico:A, 6ico:B, 6ico:C, 6icp:A, 6icp:B, 6icp:C, 6icq:A, 6icq:B, 6icq:C
10 8jng:A 147 86 0.2162 0.1633 0.2791 3.29e-06
11 7sze:B 329 108 0.2523 0.0851 0.2593 2.94e-05 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
12 6icl:A 338 120 0.2883 0.0947 0.2667 3.76e-05
13 6wn3:B 328 89 0.2432 0.0823 0.3034 7.67e-05 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
14 1sjg:A 112 108 0.2973 0.2946 0.3056 1.06e-04 4p1b:H, 4p1b:I, 4p1c:H, 4p1c:I, 2q3w:A, 1vm9:A
15 3gob:A 342 81 0.2252 0.0731 0.3086 1.20e-04 3gb4:A, 3gb4:B, 3gb4:C, 3gke:A, 3gke:B, 3gl0:A, 3gl0:B, 3gl2:A, 3gl2:B, 3gob:B, 3gob:C, 3gte:A, 3gte:B, 3gte:C, 3gts:A, 3gts:B, 3gts:C, 6vsh:A, 6vsh:B
16 6vsh:C 320 81 0.2252 0.0781 0.3086 1.31e-04 3gke:C, 3gl0:C, 3gl2:C
17 8hn2:A 110 101 0.2613 0.2636 0.2871 3.18e-04 8hn2:B
18 4qdc:A 369 100 0.2252 0.0678 0.2500 4.90e-04 4qdd:A, 4qdf:A
19 4qdf:B 357 78 0.2072 0.0644 0.2949 0.001
20 7q05:E 409 73 0.1892 0.0513 0.2877 0.002 7q04:D, 7q04:E, 7q04:F, 7q05:D, 7q05:F, 7q06:D, 7q06:E, 7q06:F, 7vju:A, 7vju:C, 7vju:E
21 2zyl:A 359 62 0.1802 0.0557 0.3226 0.014 4qck:A
22 7qwt:A 352 60 0.1802 0.0568 0.3333 0.014 7qwt:B, 7qwt:C, 7qwt:D, 7qwt:E, 7qwt:F, 7qwt:G, 7qwt:H, 7qwt:I
23 1z01:A 427 56 0.1532 0.0398 0.3036 0.018 1z01:B, 1z01:C, 1z01:D, 1z01:E, 1z01:F, 1z02:A, 1z02:B, 1z02:C, 1z02:D, 1z02:E, 1z02:F, 1z03:A, 1z03:B, 1z03:C, 1z03:D, 1z03:E, 1z03:F
24 7fhr:A 437 88 0.2342 0.0595 0.2955 0.078
25 3kvg:B 382 51 0.1441 0.0419 0.3137 2.2 3kvg:A, 3l4i:A, 3l4i:B
26 3mm5:B 363 32 0.0901 0.0275 0.3125 3.6 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
27 4dqd:A 361 38 0.1532 0.0471 0.4474 4.0 3sg0:A
28 6ldk:A 813 23 0.0991 0.0135 0.4783 4.7
29 8cmk:A 913 18 0.0811 0.0099 0.5000 6.1 8cmk:B, 6gx9:A, 6gx9:B
30 3jze:A 344 81 0.1982 0.0640 0.2716 6.2 3jze:B, 3jze:C, 3jze:D
31 3fe1:B 387 37 0.1171 0.0336 0.3514 8.1 3fe1:A, 3fe1:C
32 3qfu:A 379 37 0.1171 0.0343 0.3514 8.8
33 3fou:A 156 59 0.1351 0.0962 0.2542 9.4 3fou:B, 1nyk:A, 1nyk:B
34 7cpx:A 2262 30 0.0991 0.0049 0.3667 9.6 7cpx:B, 7cpy:A, 7cpy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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