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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QIFEDPREFLSHLEEYLRQVGGSEEYWLSQIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEG

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4x3h:A 79 66 1.0000 0.8354 1.0000 7.02e-44 8qf5:H, 6tno:A, 6tno:C, 6tno:E, 6tnq:A, 6tnq:C, 6tnq:E, 6tq0:A, 6tq0:C, 6tq0:E, 6tq0:G, 6tq0:I, 6tq0:K, 6tq0:M, 6tq0:O, 4x3i:A
2 6due:A 737 47 0.2424 0.0217 0.3404 0.22
3 8hj4:C 130 39 0.2424 0.1231 0.4103 1.5
4 7vjv:A 221 30 0.1667 0.0498 0.3667 1.6
5 6sl1:A 2652 58 0.2576 0.0064 0.2931 2.3 6sky:A, 6sky:B
6 6et5:3 58 47 0.2121 0.2414 0.2979 2.3 6et5:P, 6et5:S, 6et5:V, 6et5:Y, 6et5:b, 6et5:e, 6et5:h, 6et5:k, 6et5:n, 6et5:q, 6et5:t, 6et5:w, 6et5:z, 6et5:6, 6et5:F, 6et5:K
7 6iq5:A 459 66 0.3636 0.0523 0.3636 2.5 3pm0:A
8 1q72:H 220 34 0.1667 0.0500 0.3235 2.9 7lki:DDD, 1qyg:H, 1riu:H, 1riv:H
9 1y9d:D 560 39 0.1667 0.0196 0.2821 3.4 1y9d:A, 1y9d:C
10 4fee:A 586 39 0.1667 0.0188 0.2821 3.6 2ez4:A, 2ez4:B, 2ez8:A, 2ez8:B, 2ez9:A, 2ez9:B, 2ezt:A, 2ezt:B, 2ezu:A, 2ezu:B, 4fee:B, 4feg:A, 4feg:B, 6haf:A, 6haf:B, 4kgd:A, 4kgd:B, 1pow:A, 1pow:B, 1pox:A, 1pox:B, 1y9d:B
11 6ycx:B 817 53 0.2121 0.0171 0.2642 5.6 8a12:A, 8cdm:A, 8cdq:A, 6i7e:A, 6ycx:A, 6ycy:A, 6ycz:A
12 3v0w:H 214 34 0.1515 0.0467 0.2941 7.6
13 3s6j:E 220 15 0.1061 0.0318 0.4667 7.8 3s6j:A, 3s6j:B, 3s6j:C, 3s6j:D, 3s6j:F
14 5x4j:A 471 38 0.1667 0.0234 0.2895 8.6 5x4h:A, 5x4i:A, 5x4k:A
15 7oik:A 4426 22 0.1364 0.0020 0.4091 9.7 7oim:A, 6tax:A, 6tay:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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