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BioLiP
>protein
QIEDKIEEIESKQKKIENEIARIKKLLQLTVWGIKQLQARIL

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1czq:A 45 42 1.0000 0.9333 1.0000 7.35e-22 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
2 1fav:A 78 69 0.8810 0.4744 0.5362 2.08e-11 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
3 5apw:B 64 41 0.4762 0.3125 0.4878 6.43e-06
4 5apw:B 64 27 0.3810 0.2500 0.5926 1.14e-04
5 2bni:C 34 27 0.4762 0.5882 0.7407 1.05e-05 2bni:D, 1u9h:A
6 1uo4:B 31 27 0.5000 0.6774 0.7778 1.54e-05 1uo5:A
7 2kp8:A 72 19 0.4048 0.2361 0.8947 2.28e-05 2kp8:B
8 1uny:B 30 27 0.4762 0.6667 0.7407 2.91e-05
9 7n6u:B 595 34 0.4286 0.0303 0.5294 3.08e-05 5fuu:A, 5fuu:D, 5fuu:E, 5fuu:F, 6j5e:K, 7n6u:C, 7n6u:A, 7n6w:A, 7n6w:B, 7n6w:C, 6olp:C, 7ska:B, 7ska:O, 7ska:Z, 6vpx:C, 5y14:C, 5y14:A, 5y14:B, 5yc0:B, 5yc0:C, 5yc0:F
10 6pwu:A 615 42 0.4524 0.0309 0.4524 3.53e-05 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
11 1ysa:C 57 27 0.3810 0.2807 0.5926 3.58e-05 1dgc:A, 2dgc:A, 1ysa:D
12 3i5c:B 198 27 0.3810 0.0808 0.5926 1.06e-04 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
13 1llm:C 87 26 0.3571 0.1724 0.5769 1.79e-04 1llm:D
14 6x5b:B 149 19 0.3571 0.1007 0.7895 2.57e-04 6x5b:E, 6x5b:K, 6x5c:B, 6x5c:G, 6x5c:F
15 6opn:B 124 16 0.3333 0.1129 0.8750 0.002 6opn:E, 6opn:H
16 3crp:B 34 27 0.3095 0.3824 0.4815 0.002 2b1f:A, 2b1f:C, 3crp:C
17 2r2v:C 33 27 0.3333 0.4242 0.5185 0.002 2r2v:D
18 7ucf:B 137 19 0.3333 0.1022 0.7368 0.003 5t3x:B, 7t75:B, 7t9a:D, 7t9b:D, 7t9b:F
19 6ohy:B 120 14 0.2857 0.1000 0.8571 0.033 6ohy:E, 6ohy:F
20 4hjb:C 30 27 0.4048 0.5667 0.6296 0.45 4hjb:D
21 3w8v:A 32 27 0.2619 0.3438 0.4074 0.86 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
22 7pkt:O 584 19 0.2381 0.0171 0.5263 2.1
23 4ykn:A 1205 35 0.2381 0.0083 0.2857 3.4 4a55:A, 8am0:A, 8exl:A, 8exo:A, 8exu:A, 8exv:A, 5fi4:A, 8gub:A, 6gvf:A, 6gvg:A, 6gvi:A, 3hhm:A, 7jiu:A, 4jps:A, 4l23:A, 4l2y:A, 7mlk:A, 7myo:A, 4ovv:A, 8ow2:A, 7pg6:A, 6pys:A, 5sx9:A, 5sxj:A, 8tdu:A, 8tdu:C, 8tgd:A, 8tgd:C, 8ts9:A, 8tsa:A, 8tsb:A, 8tsc:A, 8tsd:A, 4tv3:A, 5uk8:A, 5ukj:A, 5ul1:A, 8v8h:A, 8v8h:C, 8v8i:A, 8v8i:C, 8v8j:A, 8v8j:C, 8v8v:A, 8v8v:C, 8w9a:A, 8w9b:A, 4waf:A, 5xgh:A, 5xgi:A, 3zim:A, 4zop:A
24 8ovw:L 241 21 0.2619 0.0456 0.5238 5.2
25 4r78:A 287 32 0.2619 0.0383 0.3438 5.2 4r7b:A, 4r7b:B
26 5kc1:F 61 20 0.2381 0.1639 0.5000 9.4 5kc1:D, 5kc1:B, 5kc1:L, 5kc1:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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