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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QGLLQDIEKRILHYKQLFFKEQNEIANGKRSMVPDNSIPICSDVTKLNFQALIDAQMRHAGKMFDVIMMDPPWQLDSLSD
EKIQNMPIQSLQQDGFIFVWAINAKYRVTIKMIENWGYKLVDEITWVKKTVKIAKGHGFYLQHAKESCLIGVKGDVDNGR
FKKNIASDVIFSERRGQSQKPEEIYQYINQLCPNGNYLEIFARRNNLHDNWVSIGNEL

The query sequence (length=218) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yi8:B 223 223 1.0000 0.9776 0.9776 4.41e-161 7f4p:A, 7f4q:A, 7f4t:A, 7f4t:E, 7f4t:H, 7f4t:K, 7yi9:B
2 7f4m:D 216 218 0.9266 0.9352 0.9266 6.05e-146 7f4l:C, 7f4m:C, 7f4n:C, 7f4n:D
3 5k7u:A 208 190 0.3165 0.3317 0.3632 6.68e-37 7acd:A, 8bn8:AAA, 5il1:A, 5il2:A, 5k7w:A, 5l6d:A, 5l6e:A, 7nhg:A, 7nhh:A, 7nhi:A, 7nhj:A, 7nhv:A, 7ni7:A, 7ni8:A, 7ni9:A, 7nia:A, 7nid:A, 7o08:A, 7o09:A, 7o0l:A, 7o0m:A, 7o0p:A, 7o0q:A, 7o0r:A, 7o27:A, 7o28:A, 7o29:A, 7o2e:A, 7o2f:A, 7o2h:A, 7o2i:A, 7o2x:A, 7oed:A, 7oee:A, 7oef:A, 7oeg:A, 7oeh:A, 7oei:A, 7oej:A, 7oek:A, 7oel:A, 7oem:A, 7oql:A, 7oqo:A, 7oqp:A, 8pw8:A, 8pw9:A, 8pwa:A, 8pwb:A, 5tey:A, 6ttp:A, 6ttt:A, 6ttv:A, 6ttw:A, 6ttx:A, 6tu1:A, 6y4g:A
4 7ni7:B 246 201 0.2523 0.2236 0.2736 1.39e-14 7acd:B, 7nhh:B, 7o0q:B, 7oem:B, 8pwa:B
5 7cv9:A 356 215 0.2477 0.1517 0.2512 8.61e-05 7cv6:B, 7cv7:A, 7cv7:B
6 7cv9:C 351 220 0.2431 0.1510 0.2409 1.99e-04 7cv8:A, 7dpe:A
7 7dsu:B 420 123 0.1376 0.0714 0.2439 0.63 7dsu:A
8 4h83:F 368 72 0.0963 0.0571 0.2917 1.7 4h83:A, 3no1:A, 3no1:B, 3no1:C, 3no1:D, 3no1:E, 3no1:F
9 1zun:A 204 109 0.1147 0.1225 0.2294 2.4
10 1h6d:A 383 48 0.0780 0.0444 0.3542 2.6 1evj:A, 1evj:B, 1evj:C, 1evj:D, 1h6a:A, 1h6a:B, 1h6b:A, 1h6b:B, 1h6c:A, 1h6c:B, 1h6d:C, 1h6d:B, 1h6d:D, 1h6d:E, 1h6d:G, 1h6d:F, 1h6d:H, 1h6d:I, 1h6d:K, 1h6d:J, 1h6d:L, 1ofg:A, 1ofg:D, 1ofg:B, 1ofg:C, 1ofg:E, 1ofg:F, 1ryd:A, 1ryd:B, 1rye:A, 1rye:D, 1rye:B, 1rye:C
11 3fxb:A 310 51 0.0505 0.0355 0.2157 5.6 3fxb:B
12 4as5:A 274 171 0.1789 0.1423 0.2281 5.9 4as5:B, 4as5:C, 4as5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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