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BioLiP
>protein
QERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVS
KKDFISVLR

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fkp:NG 89 89 1.0000 1.0000 1.0000 2.79e-60 8fkq:NG, 8fkr:NG, 8fks:NG
2 8i9r:Ch 71 64 0.2697 0.3380 0.3750 6.47e-04 8i9t:Ch
3 8qzc:A 701 66 0.2247 0.0285 0.3030 2.2 8qzc:B
4 7zk3:A 721 66 0.2247 0.0277 0.3030 2.5 7b5c:A, 7b5c:B, 7b5e:A, 7b5e:B, 5oyb:A, 5oyb:B, 7zk3:B
5 7u6j:B 248 32 0.1461 0.0524 0.4062 6.2 7u6i:A, 7u6j:A, 7u6j:C, 7u6j:D, 7u6j:E, 7u6j:F, 7u6j:G, 7u6j:H
6 4wxj:B 254 81 0.2247 0.0787 0.2469 7.5 4wxj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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