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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLTKKEYIELDILNKGWKLQSLNESKDLLRASF
NKLSSILQNEHDYWNKIMQSKDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSIENENKVIIELPNEKFEIELLSLD
DDSIVNHEQDLPKINDKRANLMLVMLRLLLVVIFKKTLRSRISSPHPILGKVRFANYKLLLKKIIKDYVLDIVPGSSINK
EIRAFDKLLNIPRREAGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAEVEDFLHFIVAEYIQQKK

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3j1o:I 318 318 1.0000 1.0000 1.0000 0.0 3rj1:B, 3rj1:I, 3rj1:P
2 4gwq:B 492 259 0.5535 0.3577 0.6795 3.21e-98 5sva:P
3 4gwq:B 492 157 0.3365 0.2175 0.6815 3.62e-59 5sva:P
4 7ui9:q 515 256 0.5283 0.3262 0.6562 9.97e-89 4h62:Q, 7uif:q, 7uig:q, 7uio:Aq, 7uio:Bq
5 7ui9:q 515 157 0.3365 0.2078 0.6815 9.17e-59 4h62:Q, 7uif:q, 7uig:q, 7uio:Aq, 7uio:Bq
6 8put:A 312 79 0.0660 0.0673 0.2658 1.5 8put:B, 8put:C, 8put:D
7 6raw:6 601 77 0.0535 0.0283 0.2208 2.9 6raz:6
8 6rax:6 628 77 0.0535 0.0271 0.2208 3.0 6ray:6
9 4m3o:A 145 46 0.0472 0.1034 0.3261 3.9 4fc8:A, 4fc8:B, 4m3o:B
10 6mve:A 680 66 0.0629 0.0294 0.3030 4.0 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
11 7vsj:A 160 103 0.0786 0.1562 0.2427 7.2 6fqr:A, 6gx6:A, 7yew:A, 7yew:C, 7yex:A
12 5usf:A 682 60 0.0566 0.0264 0.3000 7.9 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B
13 1ykd:A 383 41 0.0377 0.0313 0.2927 9.3 1ykd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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