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BioLiP
>protein
QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1gd2:E 65 64 1.0000 0.9846 1.0000 1.30e-39 1gd2:F, 1gd2:G, 1gd2:H
2 1gd2:I 40 58 0.6094 0.9750 0.6724 1.80e-14
3 3ffz:A 1246 51 0.2969 0.0152 0.3725 0.055 3d3x:A, 3d3x:B, 3ffz:B, 7ovw:AAA, 7ovw:BBB, 1t3a:A, 1t3a:B, 1t3c:A, 1t3c:B, 7uib:D, 7uib:A, 1zkw:A, 1zkw:B, 1zkx:A, 4zkt:A, 4zkt:C, 4zkt:E, 1zl6:A, 1zn3:A
4 7k84:A 793 51 0.2969 0.0240 0.3725 0.11
5 5t01:A 62 58 0.2969 0.3065 0.3276 0.27 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
6 8j07:8P 360 61 0.3438 0.0611 0.3607 0.61
7 5vpe:D 67 60 0.3438 0.3284 0.3667 0.76 5vpe:B, 5vpf:B, 5vpf:D
8 1m1j:C 390 38 0.2031 0.0333 0.3421 1.7 1m1j:F
9 3gp8:A 551 39 0.2344 0.0272 0.3846 3.0 3gpl:A, 3gpl:B
10 7k1j:A 3584 32 0.2188 0.0039 0.4375 3.4 7k19:A
11 7k1k:A 3604 54 0.2812 0.0050 0.3333 5.5 7k1b:A
12 8iyj:B5 203 54 0.3125 0.0985 0.3704 5.8
13 6zhe:A 3768 54 0.2656 0.0045 0.3148 8.3
14 1a0r:B 339 17 0.1406 0.0265 0.5294 8.4 7e9h:B, 8jd6:B, 6rmv:A, 7tmw:B, 1xhm:A
15 7kya:A 1174 56 0.2188 0.0119 0.2500 8.7 7ky5:A, 7ky7:A, 7ky8:A, 7ky9:A
16 1ynp:B 298 36 0.1719 0.0369 0.3056 9.3 1ynp:A, 1ynq:A, 1ynq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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