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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFTAIMLKKS
RVKLKSQEIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRD
REVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEGHIIPRSLDLLGLEKLDCGRFP
SDHWGLLCNLDII

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ino:A 253 253 1.0000 1.0000 1.0000 0.0 5ino:B, 5j3p:A, 5j3s:A
2 5j3p:B 229 248 0.8972 0.9913 0.9153 2.49e-162
3 4puq:A 256 252 0.7708 0.7617 0.7738 9.17e-149 4gyz:A, 4gyz:B, 4gyz:C, 4gyz:D, 4gyz:I, 4gyz:E, 4gyz:G, 4gyz:H, 4gz0:B, 4gz0:I, 4gz0:A, 4gz0:G, 4gz0:E, 4gz0:K, 4gz1:B, 4gz1:A, 4gz2:A, 4gz2:B, 5ht2:B, 5ht2:A, 5ink:B, 5ink:A, 5inl:B, 5inl:A, 5inm:A, 5inm:B, 5inm:D, 5inm:E, 5inp:B, 5inp:A, 5inq:B, 5inq:A, 5j3z:A, 5j3z:B, 5j42:A, 5j42:B, 4puq:B, 5tvp:I, 5tvp:O, 5tvp:G, 5tvp:E, 5tvp:B, 5tvp:A, 5tvp:K, 5tvp:M, 5tvq:A
4 4fpv:B 257 248 0.5731 0.5642 0.5847 2.50e-109 6ca4:A, 6ca4:B, 4f1h:A, 4f1h:B, 4fpv:A
5 6ca4:C 229 248 0.5573 0.6157 0.5685 5.06e-100
6 4fva:C 251 248 0.3320 0.3347 0.3387 5.51e-41 4fva:A, 4fva:B, 4fva:D
7 6nf0:A 298 258 0.2253 0.1913 0.2209 4.47e-04 6bt2:A
8 4ruw:A 386 292 0.2609 0.1710 0.2260 5.18e-04
9 6bt2:B 271 267 0.2292 0.2140 0.2172 0.010

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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