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BioLiP
>protein
QEGKAVYDKACHICHSMGVAGAPKAHDAAAWEPRIAQGLDTLVSTVKTGKGAMPPGGMCTDCTDEDYKSAIEYMSK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5b6q:A 76 76 1.0000 1.0000 1.0000 1.17e-52 5b6q:B, 6k7c:A, 6k7c:C
2 1kx2:A 81 76 0.7237 0.6790 0.7237 1.22e-40 1kx7:A
3 4j20:A 88 76 0.5000 0.4318 0.5000 1.85e-18 4j20:B
4 2zon:G 81 73 0.4737 0.4444 0.4932 5.74e-18
5 8hn3:A 80 73 0.4079 0.3875 0.4247 1.31e-17 8hn3:B
6 1cc5:A 83 77 0.4474 0.4096 0.4416 2.96e-16
7 1gks:A 78 77 0.3947 0.3846 0.3896 1.29e-07
8 5djq:C 303 58 0.2895 0.0726 0.3793 0.002 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
9 1cyj:A 90 78 0.3026 0.2556 0.2949 0.005 1cyi:A
10 1a2s:A 89 56 0.2763 0.2360 0.3750 0.007 1ced:A, 1ctj:A
11 8wil:A 574 46 0.2105 0.0279 0.3478 0.012 8wim:A
12 1gdv:A 85 75 0.2763 0.2471 0.2800 0.093
13 1c6o:A 89 56 0.2500 0.2135 0.3393 0.41 1c6o:B, 1c6r:A
14 5ey3:A 442 22 0.1579 0.0271 0.5455 0.60 4ead:A, 5ey3:B, 4lhm:A, 4yek:A, 4yek:B, 4yyy:B
15 2dge:A 102 88 0.3289 0.2451 0.2841 0.69 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
16 1kv9:A 664 18 0.1184 0.0136 0.5000 0.95
17 6v59:A 419 29 0.1711 0.0310 0.4483 0.97 6nx0:A, 6v59:B
18 1wve:C 75 73 0.2895 0.2933 0.3014 1.4 1dii:C, 1dii:D, 1diq:C, 1diq:D, 1wve:D
19 8gy2:B 433 84 0.2500 0.0439 0.2262 2.4
20 8gr7:A 326 39 0.1579 0.0368 0.3077 2.5 8gr7:B
21 7qhm:C 233 20 0.1316 0.0429 0.5000 2.7 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
22 8wql:VD 135 19 0.1053 0.0593 0.4211 3.3 1f1c:A, 1f1c:B, 8wql:VE, 8wql:V1, 8wql:v1, 8wql:vD, 8wql:vE
23 4ha3:A 489 41 0.1711 0.0266 0.3171 3.5 4ha4:A
24 7y5e:VL 134 20 0.0921 0.0522 0.3500 3.9 7y5e:V6, 7y5e:v6, 7y5e:vL, 7y7a:V9, 7y7a:v9, 7y7a:VE, 7y7a:vE, 7y7a:VO, 7y7a:vO, 7y7a:VZ, 7y7a:vZ, 7y7a:Vm, 7y7a:vm
25 4ax3:D 457 23 0.1184 0.0197 0.3913 4.3 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A
26 2lcq:A 161 11 0.0921 0.0435 0.6364 6.2
27 7kf3:A 362 23 0.1447 0.0304 0.4783 7.7 7kf3:B, 7kf3:C, 7kf3:D
28 6ud7:A 426 25 0.1579 0.0282 0.4800 9.0 6pai:C, 6q0r:B, 6q0r:C, 6q0v:B, 6q0w:B, 6ue5:A
29 7e1w:O 223 23 0.1053 0.0359 0.3478 9.5 7e1v:O, 7e1v:C, 7e1w:C, 7e1x:O, 7e1x:C, 8hcr:C, 8hcr:O
30 2iag:A 471 12 0.0921 0.0149 0.5833 9.7 3b6h:A, 3b6h:B, 2iag:B
31 1zrt:D 248 51 0.1974 0.0605 0.2941 10.0 6xi0:D, 6xi0:Q, 6xkt:D, 6xkt:Q, 6xku:D, 6xku:Q, 6xkv:D, 6xkv:Q, 6xkw:D, 6xkw:Q, 6xkx:D, 6xkx:Q, 6xkz:D, 6xkz:Q, 1zrt:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218