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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QDVVDLDFFTQEPLHLVSPSFLSVTIDANLATDPRFLILLGSPKLRTLARGLSPAYLRFGGTKTDFLIFDPKKE

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5la4:A 508 74 1.0000 0.1457 1.0000 4.52e-45 8b0b:AAA, 8b0b:BBB, 8b0c:AAA, 8b0c:BBB, 8bac:AAA, 8bac:BBB, 8cqi:A, 8cqi:B, 8e07:A, 8e07:B, 8e08:A, 8e08:B, 5e8m:A, 5e97:A, 5e97:B, 5e98:A, 5e98:B, 5e9b:A, 5e9b:B, 5e9c:A, 5e9c:B, 8jyg:A, 8jyg:B, 5l9y:A, 5l9y:B, 5l9z:A, 5l9z:B, 5la7:A, 8ohq:AAA, 8ohq:BBB, 8ohr:AAA, 8ohr:BBB, 7pr7:A, 7pr7:B, 7pr8:A, 7pr8:B, 7prt:A, 7prt:B, 7yi7:A, 7yi7:B, 7yjc:A, 7yjc:B, 6zdm:AAA, 6zdm:BBB
2 8vcd:A 321 68 0.2297 0.0530 0.2500 0.086
3 7kiu:A 263 29 0.1622 0.0456 0.4138 2.6 7kiu:B, 7kiu:C, 7kiu:D
4 7wrg:A 812 61 0.2297 0.0209 0.2787 5.2
5 7wrg:B 783 36 0.1486 0.0140 0.3056 7.4
6 6gwi:B 450 19 0.1351 0.0222 0.5263 7.7 6gwi:A
7 3ml5:A 262 80 0.3243 0.0916 0.3000 7.9 6g4t:A, 6h36:A, 6h37:A, 6h38:A, 3mdz:A, 7nc4:A, 7p1a:A, 8q3u:A, 6sdt:A, 6zr9:A
8 3t2d:A 390 45 0.1892 0.0359 0.3111 8.2 3t2b:A, 3t2c:A, 3t2e:A, 3t2f:A, 3t2g:A
9 3a20:A 122 19 0.1351 0.0820 0.5263 8.4 3a20:B, 3a6q:A, 3a6q:B, 3a6r:A, 3a6r:B, 3a6r:C, 3a6r:D, 3amf:A, 3amf:B, 3awh:A, 3awh:B, 1axj:A, 2e83:A, 2e83:B, 1flm:A, 1flm:B, 3vy2:A, 3vy2:B, 3vy5:A, 3vy5:B, 3vya:A, 1wli:A, 1wli:B, 1wlk:A, 1wlk:B, 1wlk:C, 1wlk:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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