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BioLiP
>protein
QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3f21:A 67 62 1.0000 0.9254 1.0000 6.17e-40 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
2 2acj:A 53 59 0.8065 0.9434 0.8475 3.55e-28 5zuo:A, 5zup:A
3 5zu1:D 47 61 0.7097 0.9362 0.7213 6.12e-22
4 7c0i:B 67 39 0.3710 0.3433 0.5897 1.97e-09 7c0i:A, 7c0i:C
5 4kmf:A 62 58 0.2742 0.2742 0.2931 4.03e-05
6 1sfu:A 70 46 0.2903 0.2571 0.3913 1.30e-04 1sfu:B
7 7c0j:B 62 30 0.2903 0.2903 0.6000 3.67e-04 7c0j:A
8 2heo:A 59 58 0.3226 0.3390 0.3448 5.90e-04 2heo:D, 1j75:A
9 4lb5:B 63 61 0.3065 0.3016 0.3115 0.014 4lb5:A, 4lb6:B
10 4ev0:D 214 33 0.1935 0.0561 0.3636 0.090 4ev0:A
11 3byr:A 89 29 0.1774 0.1236 0.3793 2.0
12 6zj3:LT 190 28 0.1935 0.0632 0.4286 2.0
13 3qph:A 335 40 0.1935 0.0358 0.3000 3.1 2f5t:X
14 1c3r:A 372 51 0.3065 0.0511 0.3725 4.4 1c3r:B, 1c3s:A
15 8inz:C 465 34 0.1774 0.0237 0.3235 8.9 8inz:A, 8inz:B, 8inz:D, 8io3:C, 8io3:A, 8io3:B, 8io3:D
16 6wbf:A 344 18 0.1290 0.0233 0.4444 9.8 7f8j:A, 7f8j:G, 7f8j:B, 7f8j:C, 7f8j:D, 7f8j:E, 7f8j:F, 7f8n:A, 7f8n:B, 7f8n:C, 7f8n:D, 7f8n:E, 7f8n:F, 7f8n:G, 7f8o:A, 7f8o:B, 7f8o:C, 7f8o:D, 7f8o:E, 7f8o:F, 7f8o:G, 8gyo:A, 8gyo:B, 8gyo:D, 8gyo:E, 8gyo:F, 6wbf:B, 6wbf:C, 6wbf:D, 6wbf:E, 6wbf:F, 6wbf:G, 6wbg:A, 6wbg:B, 6wbg:C, 6wbg:D, 6wbg:E, 6wbg:F, 6wbg:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417