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BioLiP
>protein
QDGEALFKSKPCAACHSIDAKMVGPALKEVAAKYAGQEGAADLLAGHIKNGTQGNWGPIPMPPNPVTEEEAKTLAEWVLS
LK

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1cor:A 82 82 0.9024 0.9024 0.9024 3.67e-51 6kq1:A, 6kq1:B
2 1cch:A 82 82 0.8902 0.8902 0.8902 1.46e-48 1fi3:A, 2i8f:A
3 351c:A 82 82 0.6829 0.6829 0.6829 2.36e-36 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
4 5xec:C 80 79 0.6463 0.6625 0.6709 8.25e-33 5xed:C
5 5xec:A 82 82 0.5976 0.5976 0.5976 1.35e-31 5xed:A
6 1a56:A 81 78 0.5366 0.5432 0.5641 1.08e-26 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
7 5aur:A 83 82 0.5610 0.5542 0.5610 6.52e-26 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
8 2d0s:A 79 80 0.4878 0.5063 0.5000 1.29e-20
9 3x15:A 87 89 0.3780 0.3563 0.3483 3.54e-09 3x15:G, 3x15:D, 3x15:J, 2zxy:A
10 4xxl:A 92 83 0.3171 0.2826 0.3133 3.16e-07
11 3cp5:A 116 33 0.1829 0.1293 0.4545 9.96e-06 6cuk:A, 6cun:A
12 5z25:A 96 35 0.1829 0.1562 0.4286 3.33e-05
13 1fj0:A 114 34 0.2195 0.1579 0.5294 2.95e-04 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
14 1w2l:A 97 27 0.1585 0.1340 0.4815 0.001
15 1qn2:A 99 27 0.1585 0.1313 0.4815 0.032 1qn2:B, 1qn2:C
16 5guw:A 142 78 0.2317 0.1338 0.2436 0.039 5guw:C, 5gux:C, 3o0r:C, 3wfb:C, 3wfc:C, 3wfd:C, 3wfe:C
17 1hro:A 105 52 0.2073 0.1619 0.3269 0.19 1hro:B
18 6h5l:B 220 91 0.2561 0.0955 0.2308 0.40
19 7w2j:C 418 92 0.3780 0.0742 0.3370 0.49 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
20 4aam:A 324 17 0.1341 0.0340 0.6471 2.1 4aal:A, 4aal:B, 4aan:A, 4aao:B
21 4aao:A 303 17 0.1341 0.0363 0.6471 2.1
22 8ed4:I 105 43 0.2195 0.1714 0.4186 2.7 8ed4:J, 8ed4:K, 8ed4:L
23 2c2c:A 112 22 0.1463 0.1071 0.5455 2.7 3c2c:A
24 7scd:A 371 44 0.1951 0.0431 0.3636 3.8 3bd9:A, 7sce:A
25 1nml:A 316 17 0.1098 0.0285 0.5294 4.7 1rz5:A, 1rz6:A
26 6tm5:P 492 19 0.0976 0.0163 0.4211 5.7
27 4mc3:A 287 21 0.0976 0.0279 0.3810 6.7
28 6ibl:A 397 24 0.1220 0.0252 0.4167 7.3 5a8e:A, 4ami:A, 4ami:B, 4amj:A, 4amj:B, 4bvn:A, 8dcr:R, 8dcs:R, 2eiq:A, 2eiq:B, 2eir:A, 2eir:B, 2eir:C, 2eir:D, 5f8u:B, 5f8u:A, 6h7j:A, 6h7j:B, 6h7l:A, 6h7l:B, 6h7m:A, 6h7m:B, 6h7n:A, 6h7n:B, 6h7o:A, 6h7o:B, 5hr0:A, 5hr0:B, 5hr1:D, 5hr2:A, 4hu7:A, 4hu7:B, 4hu9:A, 4hua:A, 6ibl:B, 7jjo:R, 1keb:A, 1keb:B, 7s0f:R, 7s0g:R, 1tho:A, 6tko:A, 2trx:A, 2trx:B, 1txx:A, 2vt4:A, 2vt4:B, 2vt4:C, 2vt4:D, 2y00:A, 2y00:B, 2y01:A, 2y01:B, 2y02:A, 2y02:B, 2y03:A, 2y03:B, 2y04:A, 2y04:B, 2ycw:A, 2ycw:B, 2ycx:A, 2ycx:B, 2ycy:A, 2ycy:B, 2ycz:A, 2ycz:B, 3zpq:A, 3zpq:B, 3zpr:A, 3zpr:B
29 3hxs:A 117 31 0.1463 0.1026 0.3871 7.6 3hyp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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