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BioLiP
>protein
QDDSTPDSLFAGLVGEYYGTNSQLNNISDFRALVDSKEADATFEAANISYGRGSSDVAKGTHLQEFLGSDASTLSTDPGD
NTDGGIYLQGYVYLEAGTYNFKVTADDGYEITINGNPVATVDNNQSVYTVTHASFTISESGYQAIDMIWWDQGGDYVFQP
TLSADGGSTYFVLDSAILSSTGETPY

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5j6y:A 188 186 1.0000 0.9894 1.0000 3.81e-134 6x7j:A, 6x7t:A, 6x7x:A, 6x7y:A, 6x7z:A, 6x8a:A, 6x8d:A, 6x8y:A, 6x95:A, 6x9m:A, 6x9p:A, 6xa5:A, 6xac:A, 6xaq:A
2 6m8m:A 177 162 0.3548 0.3729 0.4074 5.19e-36
3 3sfz:A 1133 74 0.1237 0.0203 0.3108 0.055 3shf:A
4 6w1f:A 280 93 0.1559 0.1036 0.3118 0.091 7ji0:A, 7ji0:B, 6w1f:B
5 3qgv:A 435 48 0.0806 0.0345 0.3125 0.90
6 3ndz:A 345 36 0.0538 0.0290 0.2778 2.9 3ndz:C, 3ndz:B, 3ndz:D
7 2wt0:A 300 34 0.0753 0.0467 0.4118 3.8 2wsv:A, 2wt1:A, 2wt2:A, 2wt2:B
8 6akz:A 451 45 0.0806 0.0333 0.3333 5.0
9 3sqs:A 386 47 0.0860 0.0415 0.3404 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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