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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QCKPIPALYTVYVLRSTVRHASLYIGSTPNPPRRLKQHNGLVPGGAARTSRSSLRPWEMVALVSGFPSMVAALKFQWALT
NPHLSVHIPSASRPQRPPRSLASVVANLHLLLRVPSFARWPLRVHFFRRDVFAAWEKWCAAASERLRPSLAVVTDFEGGC
WGIHALPLDYEPIKDYVAKGQEIFEFERQGACVVCREEMASGDGLQALCTNQGCDGVGHLSCWSRHFLKDSILPVQGQCP
KCGGEMEWGNMMKELTLRTRGQKEVEKLLK

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sei:A 276 275 1.0000 0.9783 0.9818 0.0 6sei:C
2 6seh:C 252 270 0.9296 0.9960 0.9296 0.0 6seh:A
3 7cq3:A 298 292 0.3519 0.3188 0.3253 1.79e-38 7cq2:B, 7cq4:A
4 4xm5:A 267 269 0.3037 0.3071 0.3048 3.18e-34 4xlg:A
5 7cq2:A 274 287 0.3296 0.3248 0.3101 5.23e-33
6 4zdt:C 70 59 0.0778 0.3000 0.3559 3.76e-06 4zdt:A
7 5zb8:A 400 91 0.0926 0.0625 0.2747 0.026 7k30:A, 7k31:A, 7k32:A, 7k33:A, 5zb8:B, 5zb8:C, 5zb8:D, 5zb8:E
8 7u48:A 264 50 0.0593 0.0606 0.3200 1.7 7bh5:A, 7bh7:A, 8ehh:A, 5fa7:A, 5fa7:B, 5fao:A, 5fao:B, 5fap:B, 5fap:A, 4hbu:A, 6ity:A, 6ity:B, 6j2b:A, 6j2b:B, 6j2k:A, 6j2k:B, 6j2o:A, 6j2o:B, 6qw8:A, 4s2i:A, 4s2i:B, 6sp6:A, 5t66:A, 5t66:B, 7ti0:A, 7u48:B, 7u48:C, 7u49:A, 7u49:B, 7u49:C, 7u4b:A, 7u4b:B, 7u4b:C, 4xuz:A, 6z7k:A
9 6a3z:A 56 53 0.0593 0.2857 0.3019 1.9
10 5ywr:B 87 52 0.0667 0.2069 0.3462 2.2
11 3ank:A 377 39 0.0519 0.0371 0.3590 2.4
12 2zzr:A 397 19 0.0370 0.0252 0.5263 2.7
13 6g4g:C 742 60 0.0630 0.0229 0.2833 4.1
14 7vo5:A 276 48 0.0481 0.0471 0.2708 5.8
15 6knb:B 1120 13 0.0296 0.0071 0.6154 7.8 6knc:B
16 6hqg:B 364 37 0.0407 0.0302 0.2973 8.5 6hqg:A, 6hqg:C, 6hqg:D
17 8hw0:A 329 47 0.0556 0.0456 0.3191 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218