Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QCDLSQFQTTSSNQLMAAIRQQGASCVNALFSADTGVQEAAFSSNHMYNVAQYTRTLAQQYAGGGSDELEALYLYLRAGY
YAEFYNSNITFLSWVTPAVKGAVDAFVQNAHFYDNGDAHGKVLNEVIITMDSAGLQHAYLDVVTQWLTRWNAQYAEHWYM
RNAVNGVFTLLFGGQWNNQYTSLIGEQTALVTALQAFALDRTKVNSPTEFMAANAARELGRLARYTDATIAPKVTEGLTA
IFGQYPSYGDGDAIWLGAADTASYYADCSQFNICGFEDALRDAALNQTFICSDTIKIRSQDMSQAQHLAACDKMAYEESF
FHTTLETGNQPVADDHNTQLQVNIFNSDTDYGKYAGPIFGIDTNNGGMYLEGNPANVGNIPNFIAYEASYANPDHFVWNL
EHEYVHYLDGRFNMYGDFGTPTELVVWWSEGVAEYVSRVNDNPQAIATIQDGSTYTLAQVFDTTYDGFDVDRIYRWGYLA
VRFMFERHPDEVQRMLSATRQGRWAEYKAIISGWANQYQSEFAQWTEALAKG

The query sequence (length=532) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wss:A 533 532 1.0000 0.9981 1.0000 0.0 8jt1:A, 8jt1:B, 7wss:B, 7xeb:A, 7xeb:B
2 7esi:A 532 528 0.6992 0.6992 0.7045 0.0 7vlz:A
3 4are:A 678 553 0.2387 0.1873 0.2297 1.54e-11 2y50:A, 2y6i:A, 7z5u:A, 7zbv:A
4 4ar9:A 392 252 0.1147 0.1556 0.2421 5.27e-08 4ar8:A, 4ar8:B, 4ar9:B
5 4ar1:A 381 115 0.0789 0.1102 0.3652 1.06e-06 4arf:A, 5o7e:A, 7zoc:A
6 1kkr:A 411 129 0.0658 0.0852 0.2713 0.059 1kkr:B
7 8rg0:P 88 65 0.0414 0.2500 0.3385 0.82
8 7xyo:A 524 57 0.0320 0.0324 0.2982 1.4 7xyo:B
9 2x28:A 219 142 0.0658 0.1598 0.2465 1.4
10 1y2u:A 142 106 0.0526 0.1972 0.2642 2.6 1y2u:B, 1y2v:A, 1y2v:B, 1y2w:A, 1y2w:B, 1y2x:A, 1y2x:B, 1y2x:C, 1y2x:D
11 7u0l:A 904 149 0.0658 0.0387 0.2349 4.9
12 6lse:A 464 54 0.0320 0.0366 0.3148 6.8 5f8g:A, 5f8h:A, 5f8i:A, 5f8j:A, 5f8l:A, 5f8m:A, 5f8n:A, 4ika:A, 6kwq:A, 6kwr:A, 6lsf:A, 6lsg:A, 6lsh:A, 3n6m:A, 3n6n:A, 7w9s:A, 5y6z:A, 5y6z:E

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218