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BioLiP
>protein
PYEPLIDWFTRHEEVMPLTAVPEPKRRFVPSKNEAKRVMKIVRAIREGRIIPPKKLKEMKEKEKIENYQYDLPPTNEESY
NPPEEYLLSPEEKEAWENTEYSERERNFIPQKYSALRKVPGYGESIRERFERSLDLY

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8v83:m 211 147 1.0000 0.6493 0.9320 3.26e-91 8v84:m
2 6elz:m 645 157 1.0000 0.2124 0.8726 6.45e-87 6em5:m, 7ohr:m, 7ohv:m
3 7nac:m 666 157 0.9708 0.1997 0.8471 4.07e-82 8e5t:s, 6em1:m, 6em3:B, 7nad:m, 7ohp:m, 7ohs:m, 7ohw:m, 7ohx:m, 7r6q:m, 7r72:m, 7r7a:m, 8v87:m
4 8i9p:CC 258 152 0.5474 0.2907 0.4934 5.21e-41
5 8i9x:CC 658 152 0.5474 0.1140 0.4934 3.29e-39 8i9r:CC, 8i9t:CC, 8i9v:CC, 8i9w:CC, 8i9y:CC, 8i9z:CC, 8ia0:CC, 8pv2:CC
6 6cb1:s 512 60 0.4380 0.1172 1.0000 5.60e-36 6c0f:s
7 6cb1:s 512 24 0.1752 0.0469 1.0000 8.86e-09 6c0f:s
8 8fkp:SS 235 144 0.4599 0.2681 0.4375 1.85e-30 8fkq:SS, 8fkr:SS, 8fks:SS
9 8fky:SS 628 153 0.4599 0.1003 0.4118 7.02e-28 8fkt:SS, 8fku:SS, 8fkv:SS, 8fkw:SS, 8fkx:SS
10 8esq:m 572 147 0.4526 0.1084 0.4218 2.16e-23 8esr:m, 8etg:m, 8eti:m, 8eug:m, 8eui:m
11 8eth:m 76 58 0.1971 0.3553 0.4655 2.31e-12 8eup:m, 8ev3:m
12 8euy:m 92 58 0.1971 0.2935 0.4655 2.96e-12
13 3jb6:B 498 65 0.1460 0.0402 0.3077 1.3 3jb7:B
14 7v55:A 781 37 0.1241 0.0218 0.4595 1.3
15 2dns:A 362 29 0.0803 0.0304 0.3793 2.9 2dns:B, 2dns:C, 2dns:D, 2dns:E, 2efu:A, 2efu:B, 2efu:C, 2efu:D, 2efx:A, 2efx:B, 2efx:C, 2efx:D, 2efx:E
16 2efu:E 342 29 0.0803 0.0322 0.3793 3.0 2efu:F, 2efx:F
17 6ipz:Z 63 49 0.0949 0.2063 0.2653 3.8 1a0n:B, 1azg:B, 4eik:A, 1fyn:A, 8kdx:A, 3ua7:A, 3ua7:D, 3ua7:C, 4znx:A, 4znx:D, 4znx:B, 4znx:C
18 8eza:L 3720 27 0.0803 0.0030 0.4074 8.5 8eza:C, 7lt3:C, 7lt3:L
19 7ebp:A 526 34 0.0803 0.0209 0.3235 8.9 7ebp:B, 7ebq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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