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BioLiP
>protein
PWSREAVLSLYRALLRQGRQLRYTDRDFYFASIRREFRKNQKLEDAEARERQLEKGLVFLNGKLGRII

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7a5h:v 69 68 1.0000 0.9855 1.0000 5.88e-44 8k2b:v, 7o9k:v, 7o9m:v, 7odr:v, 7ods:v, 7odt:v, 7oi6:v, 7oi7:v, 7oi8:v, 7oi9:v, 7oic:v, 7oid:v, 7oie:v, 5ool:v, 5oom:v, 7pd3:v, 8pk0:v, 7po4:zb, 8qsj:v, 8qu5:v
2 6yxy:EJ 95 69 0.3529 0.2526 0.3478 4.20e-05 7aoi:XM
3 6uxe:B 85 44 0.2647 0.2118 0.4091 0.004 6nzu:B, 6nzu:F, 6odd:B, 8pk8:B, 8pk9:B, 8pka:B, 7rtk:B, 8tvt:B, 5usr:F, 5usr:H, 5usr:B, 5usr:D, 6w1d:B, 5wgb:B, 6wi2:B, 6wih:B, 5wkp:B, 5wkp:F, 5wlw:B, 5wlw:F
4 8act:A 873 41 0.2353 0.0183 0.3902 1.0 8act:B, 9f6c:B, 8qyp:A, 8qyq:A, 8qyq:B, 8qyr:B
5 3tto:A 1055 61 0.2647 0.0171 0.2951 3.2 3tto:B, 3tto:C, 3tto:D, 3ttq:A, 4ttu:A, 4tvc:A, 4tvd:A
6 8yyr:A 496 16 0.1471 0.0202 0.6250 8.1 7dq5:A, 7dq5:B, 7dq6:A, 7dq6:B, 6m01:A, 8yyq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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