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BioLiP
>protein
PVYRLPPLPRLKVKKPIIRQEANKCLVLMSNLLQCWSSYGHMSPKCAGLVTELKSCTSESALGKSNINYHAARLYDRING
KPHD

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8om2:Z 92 90 1.0000 0.9130 0.9333 1.83e-56 8d8k:Z, 8d8l:Z, 5mrc:ZZ, 5mre:ZZ, 5mrf:ZZ, 8om3:Z, 8om4:Z
2 6yw5:11 88 78 0.3333 0.3182 0.3590 6.48e-12 6ywe:11, 6ywx:11, 6ywy:11
3 7pnw:2 117 65 0.2024 0.1453 0.2615 1.3
4 3jd5:m 118 69 0.2024 0.1441 0.2464 2.4 5aj3:m, 5aj4:Am, 6gaw:Am, 6gaz:Am, 6neq:m, 6nf8:m, 7nqh:Am, 7nql:Am, 7nsi:Am, 7nsj:Am, 8oin:Ac, 8oip:Ac, 6ydp:Am, 6ydw:Am
5 5ywr:B 87 26 0.0952 0.0920 0.3077 4.4
6 6z1p:BB 110 17 0.0833 0.0636 0.4118 6.9
7 6wot:A 4197 43 0.1786 0.0036 0.3488 9.0 6wot:B, 6wot:C, 6wot:D
8 7p84:C 408 29 0.1190 0.0245 0.3448 9.1 7p84:A, 7p8m:A, 7p8m:C
9 4k0b:A 404 29 0.1190 0.0248 0.3448 9.1 4k0b:B, 4l2z:A, 4l2z:B, 4l7i:A, 4l7i:B
10 7m6a:A 4306 43 0.1786 0.0035 0.3488 9.3 7m6a:G, 7m6a:B, 7m6a:I, 7m6l:A, 7m6l:G, 7m6l:B, 7m6l:I
11 7tzc:A 4404 43 0.1786 0.0034 0.3488 9.3 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
12 8vk4:D 4379 43 0.1786 0.0034 0.3488 9.5 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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