Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PVYEHLLPVNGAWRQDVTNWLSEDVPSFDFGGYVVGSDLKEANLYCKQDGMLCGVPFAQEVFNQCELQVEWLFKEGSFLE
PSKNDSGKIVVAKITGPAKNILLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSMLVGG
CDTHRYDLSSMVMLKDNHIWATGSITNAVKNARAVCGFAVKIEVECLSEDEATEAIEAGADVIMLDNHFLLECSGGLNLD
NLYLCDDIDIYSTSSIHQGTPVIDFSLKLA

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3c2v:A 270 270 1.0000 1.0000 1.0000 0.0 3c2f:A, 3c2o:A, 3c2r:A, 3c2r:B
2 5ayy:A 289 273 0.4481 0.4187 0.4432 4.54e-71 5ayy:B, 5ayy:C, 5ayy:D, 5ayy:E, 5ayy:F, 5ayy:G, 5ayy:H, 5ayy:I, 5ayz:A, 5ayz:B, 5ayz:C, 5ayz:D, 5ayz:E, 5ayz:F, 5ayz:G, 5ayz:H, 5ayz:I, 5ayz:J, 5ayz:K, 5ayz:L, 4kww:A, 4kww:B, 4kww:C, 4kww:D, 4kww:E, 4kww:F
3 4i9a:A 288 271 0.4481 0.4201 0.4465 7.58e-68 4i9a:B
4 2b7n:A 273 279 0.3519 0.3480 0.3405 7.93e-36 2b7n:B, 2b7n:C, 2b7p:A, 2b7p:B, 2b7p:C, 2b7q:A, 2b7q:B, 2b7q:C
5 3tqv:B 280 272 0.3111 0.3000 0.3088 5.94e-34 3tqv:A
6 1qap:A 289 272 0.3111 0.2907 0.3088 5.30e-32 1qap:B
7 7xgl:A 297 256 0.3111 0.2828 0.3281 1.62e-26 7xgl:B, 7xgm:A, 7xgm:B, 7xgn:A, 7xgn:B
8 3gnn:A 266 285 0.3074 0.3120 0.2912 3.48e-25
9 1qpn:A 284 277 0.2926 0.2782 0.2852 3.07e-24 1qpn:B, 1qpn:C, 1qpn:D, 1qpn:E, 1qpn:F, 1qpq:A, 1qpq:B, 1qpq:C, 1qpq:D, 1qpq:E, 1qpq:F, 1qpr:A, 1qpr:B, 1qpr:C, 1qpr:D, 1qpr:E, 1qpr:F
10 3gnn:B 244 284 0.2926 0.3238 0.2782 1.24e-23
11 2i14:A 389 114 0.1148 0.0797 0.2719 0.011 2i14:B, 2i14:C, 2i14:D, 2i14:E, 2i14:F
12 7jil:E 174 104 0.1000 0.1552 0.2596 0.25
13 3ut0:A 804 50 0.0667 0.0224 0.3600 2.3 3rrx:A, 3usz:A, 3ut0:B, 3ut0:C, 3ut0:D
14 3stp:A 390 60 0.0667 0.0462 0.3000 2.4
15 2bmb:A 513 86 0.0778 0.0409 0.2442 7.1
16 7fh4:A 140 27 0.0370 0.0714 0.3704 9.1 7fh4:B, 7fh9:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218