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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PVLTSKDKITKRMIVVLAMASLETHKIDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQ
TSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEK
LDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ajt:JG 230 217 1.0000 0.9391 0.9954 3.31e-160 7aju:JG, 7d4i:RG, 7d4i:RH, 7d5s:RG, 7d5s:RH, 7d63:RG, 7d63:RH, 5jpq:f, 6ke6:RG, 6ke6:RH, 6lqp:RG, 6lqp:RH, 6lqq:RG, 6lqq:RH, 6lqr:RG, 6lqr:RH, 6lqs:RG, 6lqs:RH, 6lqt:RH, 6lqu:RG, 6lqu:RH, 6lqv:RG, 6lqv:RH, 3oii:A, 3oii:B, 3oij:A, 3oij:B, 3oin:A, 3oin:B, 7suk:SJ, 7suk:SK, 2v3k:A, 5wlc:SJ, 5wlc:SK, 5wyj:E1, 5wyj:E2, 5wyk:E1, 5wyk:E2, 6zqa:JG, 6zqb:JG, 6zqc:JG, 6zqd:JG, 6zqe:JG, 6zqg:JG
2 6rxt:CN 226 214 0.7361 0.7035 0.7430 2.25e-120 5oql:e, 6rxu:CN, 6rxv:CN, 6rxx:CN, 6rxy:CN, 6rxz:CN
3 5fai:A 209 207 0.5417 0.5598 0.5652 1.31e-77 7mq8:SK, 7mq8:SJ, 7mq9:SK, 7mq9:SJ, 7mqa:SK, 7mqa:SJ
4 3bbd:A 204 208 0.2546 0.2696 0.2644 1.63e-16 3bbd:B, 3bbh:A, 3bbh:B
5 3o7b:A 216 162 0.2315 0.2315 0.3086 9.05e-13
6 8dkt:A 264 57 0.0926 0.0758 0.3509 0.058
7 6rm3:LQ0 184 50 0.0787 0.0924 0.3400 1.2
8 1udv:A 88 39 0.0741 0.1818 0.4103 1.5
9 6skf:Ba 154 53 0.0787 0.1104 0.3208 2.1 6skg:Ba, 6th6:Ba
10 1mjh:B 144 96 0.1019 0.1528 0.2292 2.4 1mjh:A
11 5wyr:B 248 62 0.0741 0.0645 0.2581 2.6 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B
12 6qdj:A 758 38 0.0509 0.0145 0.2895 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218