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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PVKDREAFQRLNFLYQAAHCVLAQDPENQALARFYCYTERTIAKRLVLRRDPSVKRTLCRGCSSLLVPGLTCTQRQRRCR
GQRWTVQTCLTCQRSQRFLNDPGHLLWGDRPEAQLGSQADS

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ahr:K 121 121 1.0000 1.0000 1.0000 9.62e-87 6ahu:K
2 6agb:K 128 70 0.1818 0.1719 0.3143 1.38e-04 6ah3:K
3 6k0b:G 120 88 0.2066 0.2083 0.2841 0.020 6k0a:G, 6k0a:H, 6k0b:H
4 7jl0:A 662 80 0.2066 0.0378 0.3125 0.025 7jl2:A, 7jl2:C, 7jl2:E
5 4gl2:A 617 60 0.1488 0.0292 0.3000 0.038 4gl2:B
6 6tf9:UP1 569 64 0.1240 0.0264 0.2344 1.1
7 2d0v:A 597 14 0.0744 0.0151 0.6429 1.5 2d0v:D, 2d0v:I
8 7bkq:A 640 78 0.1653 0.0312 0.2564 1.5
9 6h61:A 660 78 0.1653 0.0303 0.2564 1.6 6g1s:A, 6g1x:A, 7nga:A
10 5zns:A 381 52 0.1240 0.0394 0.2885 2.1 5znt:A
11 1w6s:C 596 21 0.0744 0.0151 0.4286 2.2 1h4i:A, 1h4i:C, 1h4j:A, 1h4j:C, 1h4j:E, 1h4j:G, 1w6s:A
12 7bkp:A 689 76 0.1653 0.0290 0.2632 3.9 6g19:A, 6gjz:A, 6gkh:A, 6gkm:A, 6h66:A, 7nic:A, 7niq:B
13 8gym:s1 689 67 0.1570 0.0276 0.2836 4.3 8b6f:AB, 8bqs:AB, 8gym:S1, 8gzu:s1, 8gzu:S1, 7tgh:S1
14 4aah:A 571 21 0.0661 0.0140 0.3810 6.8 4aah:C, 2ad6:A, 2ad6:C, 2ad7:A, 2ad7:C, 2ad8:A, 2ad8:C, 1g72:A, 1g72:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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