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BioLiP
>protein
PVKCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWREFLSTVFT

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zdt:C 70 70 1.0000 1.0000 1.0000 2.70e-47 4zdt:A
2 6sei:A 276 59 0.3143 0.0797 0.3729 2.17e-08 6sei:C
3 6seh:C 252 59 0.3000 0.0833 0.3559 1.43e-06 6seh:A
4 7cq3:A 298 73 0.3143 0.0738 0.3014 4.98e-04 7cq2:B, 7cq4:A
5 4xm5:A 267 57 0.2714 0.0712 0.3333 0.001 4xlg:A
6 7cq2:A 274 73 0.3286 0.0839 0.3151 0.020
7 1nrj:B 191 40 0.1857 0.0681 0.3250 0.18
8 6vzd:E 85 23 0.1429 0.1176 0.4348 0.43 6vyn:A, 6vyn:E, 6vyn:C, 6vyn:B, 6vyn:D, 6vyn:F, 6vyn:G, 6vyn:H, 6vzd:A, 6vzd:C, 6vzd:B
9 6mn8:A 399 31 0.1571 0.0276 0.3548 1.8
10 7ale:A 419 22 0.1000 0.0167 0.3182 3.2 7ale:B, 6yb8:A, 6yb8:B, 6yb9:A, 6yb9:B
11 7z50:H 186 42 0.1714 0.0645 0.2857 5.7 7z50:G
12 6mss:A 181 42 0.1714 0.0663 0.2857 5.7
13 7qfw:A 823 29 0.1714 0.0146 0.4138 7.4 5oqn:A, 5oqo:A, 5oqp:A, 7q2z:E
14 3b7n:A 307 34 0.1571 0.0358 0.3235 8.4 3b7z:A, 6sld:A
15 8gl8:A 2290 29 0.1714 0.0052 0.4138 9.4 8gl6:A, 8glj:A, 8glk:A, 8glm:A, 8gln:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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