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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PVIKMYQIGDKPDNLDELLANANKIIEEKVGAKLDIQYLGWGDYGKKMSVITSSGENYDIAFADNYIVNAQKGAYADLTE
LYKKEGKDLYKALDPAYIKGNTVNGKIYAVPVAANVASSQNFAFNGTLLAKYGIDISGVTSYETLEPVLKQIKEKAPDVV
PFAIGKVFIPSDNFDYPVANGLPFVIDLEGDTTKVVNRYEVPRFKEHLKTLHKFYEAGYIPKDVATSDTSFDLQQDTWFV
REETVGPADYGNSLLSRVANKDIQIKPITNFIKKNQTTQVANFVISNNSKNKEKSMEILNLLNTNPELLNGLVYGPEGKN
WEKIEGKENRVRVLDGYKGNTHMGGWNTGNNWILYINENVTDQQIENSKKELAEAKESPALGFIFNTDNVKSEISAIANT
MQQFDTAINTGTVDPDKAIPELMEKLKSEGAYEKVLNEMQKQYDEFLKNK

The query sequence (length=450) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5mlt:A 454 450 1.0000 0.9912 1.0000 0.0 5swa:A, 5swa:B, 5swb:A, 5swb:C, 5swb:D, 5swb:G
2 5z6b:A 393 126 0.0756 0.0865 0.2698 6.32e-04
3 5ci5:A 393 57 0.0444 0.0509 0.3509 0.016 5ci5:B
4 7qhv:AAA 390 106 0.0733 0.0846 0.3113 0.016 7ofy:A, 7ofy:B, 7qhv:BBB, 8s5b:A, 7yzs:AAA, 7yzu:A
5 5ysd:B 389 228 0.1244 0.1440 0.2456 0.028 5ysb:A, 5ysb:B, 5ysd:A, 5yse:A, 5yse:B, 5ysf:A, 5ysf:B
6 2uvh:A 404 123 0.0689 0.0767 0.2520 0.12 2uvi:A, 2uvj:A
7 4qrz:A 383 132 0.0800 0.0940 0.2727 0.20 4qsc:A, 4qsd:A
8 7ehq:A 406 64 0.0489 0.0542 0.3438 0.66 7ehu:A
9 5f7v:A 388 138 0.0822 0.0954 0.2681 0.75
10 3tsz:A 341 111 0.0578 0.0762 0.2342 0.96 3shw:A
11 5h71:B 492 53 0.0444 0.0407 0.3774 1.0 5h6u:A, 5h6u:B, 5h71:A, 1j1n:A, 1j1n:B, 6jhx:A, 6jhx:B, 1kwh:A, 4tqu:Q, 4xig:Q, 4xtc:Q
12 7bvt:A 391 93 0.0600 0.0691 0.2903 1.6
13 7tl7:A 531 55 0.0356 0.0301 0.2909 1.7 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D
14 4g68:A 392 74 0.0511 0.0587 0.3108 2.4 4g68:B
15 4rya:A 417 111 0.0600 0.0647 0.2432 2.4
16 3lqv:B 115 41 0.0289 0.1130 0.3171 3.1 2f9j:B, 3lqv:A, 7q4o:F, 8qo9:B6, 8qxd:B6, 8qzs:B6, 8r08:B6, 8r09:B6, 8r0a:B6, 8r0b:B6, 8rm5:B6
17 3a46:A 288 71 0.0489 0.0764 0.3099 3.7 3a46:B, 4nrw:A, 4nrw:B, 3vk7:A, 3vk7:B, 3vk8:A, 3vk8:B
18 4z11:A 513 47 0.0378 0.0331 0.3617 3.8 4z0y:A, 4z0y:B, 4z0y:D, 4z0y:C, 4z0z:A, 4z0z:B, 4z0z:C, 4z0z:D, 4z10:A, 4z10:C, 4z10:B, 4z10:D, 4z10:E, 4z10:F, 4z11:B, 4z11:C, 4z11:D, 4z12:A, 4z12:B, 4z13:A, 4z13:B, 4z14:D, 4z14:B, 4z14:H, 4z14:F, 4z14:C, 4z14:E, 4z14:G, 4z14:A
19 8g6p:A 508 84 0.0578 0.0512 0.3095 5.8
20 8brr:B 527 27 0.0267 0.0228 0.4444 5.8 8brq:B, 8brr:D, 8brs:B, 8brt:B, 6nvx:B
21 4gey:A 420 56 0.0356 0.0381 0.2857 6.4
22 3a09:A 490 35 0.0333 0.0306 0.4286 7.4 3vlu:A, 3vlv:A, 3vlw:A, 3vlw:B, 1y3n:A, 1y3p:A, 1y3q:A
23 7b0h:F 762 161 0.0911 0.0538 0.2547 7.5 7b07:A, 7b08:A, 7b0f:A, 7b0g:A, 7b0h:E, 1qqc:A, 5vu8:A, 2vwj:A, 2xhb:A
24 6ifh:A 119 93 0.0644 0.2437 0.3118 8.2
25 4gf4:A 299 51 0.0400 0.0602 0.3529 8.2
26 5m95:A 395 41 0.0356 0.0405 0.3902 9.0 5m95:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218