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BioLiP
>protein
PTYSEMIAAAIRAGSSRQSIQAYIKSHYHNKKEINRVLYSLLAAGVLKQTGVPGSWALA

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c0j:B 62 62 0.9831 0.9355 0.9355 2.92e-33 7c0j:A
2 8xjv:Aq 190 71 0.7627 0.2368 0.6338 3.61e-17 4qlc:U, 5wcu:U, 5wcu:V, 8xjv:Ah, 8xjv:Ai, 8xjv:Aj, 8xjv:Ak, 8xjv:Al, 8xjv:Am, 8xjv:An, 8xjv:Ao, 8xjv:Ap, 8xjv:Ar, 8xjv:As, 7xvm:U, 7xvm:V
3 6lab:V 109 71 0.6271 0.3394 0.5211 4.42e-13 8aag:Z, 7cow:S, 7cow:T, 7dbp:K, 7k5x:U, 6la2:S, 6la2:T, 6la8:S, 6la9:S, 6la9:T, 6lab:U, 5nl0:Z, 8tb9:A, 7xvl:o, 7xx6:o, 7xx6:p
4 5zu1:D 47 43 0.3390 0.4255 0.4651 1.80e-04
5 2acj:A 53 30 0.3051 0.3396 0.6000 2.44e-04 5zuo:A, 5zup:A
6 3f21:A 67 30 0.3051 0.2687 0.6000 3.71e-04 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
7 7c0i:B 67 30 0.2542 0.2239 0.5000 0.017 7c0i:A, 7c0i:C
8 1qor:A 326 33 0.2203 0.0399 0.3939 1.7 1qor:B
9 5y58:A 548 27 0.2034 0.0219 0.4444 3.7 5y58:E, 5y58:C
10 3gfy:B 374 44 0.2203 0.0348 0.2955 7.2 3gfy:A
11 3gfx:B 394 44 0.2203 0.0330 0.2955 7.2 3gfx:A, 3gfz:A, 3gfz:B, 3gg0:A, 3gg0:B, 3gg1:A, 3gg1:B, 2kb2:A
12 3shx:A 175 32 0.1695 0.0571 0.3125 8.1 6i36:A, 6i9p:A, 6i9t:A, 6iaf:A, 6iaj:A, 5j8s:A, 5j8w:A, 5j93:A, 5j9v:A, 5jac:A, 3ka3:A, 3ka4:A, 3ka6:A, 3ka8:A, 3ka9:A, 4lpj:A, 4lpm:A, 4lpn:A, 4lqh:A, 4lqj:A, 4lqv:A, 4lyu:A, 4lyx:A, 1mfr:A, 1mfr:B, 1mfr:C, 1mfr:D, 1mfr:E, 1mfr:F, 1mfr:G, 1mfr:H, 1mfr:I, 1mfr:J, 1mfr:K, 1mfr:L, 1mfr:M, 1mfr:N, 1mfr:O, 1mfr:P, 1mfr:Q, 1mfr:R, 1mfr:S, 1mfr:T, 1mfr:U, 1mfr:V, 1mfr:W, 1mfr:X, 4mjy:A, 4mku:A, 4ml5:A, 4mn9:A, 4my7:A, 3rbc:A, 3rbc:B, 3rbc:C, 3rbc:D, 3rbc:E, 3rbc:F, 3rbc:G, 3rbc:H, 3rbc:I, 3rbc:J, 3rbc:K, 3rbc:L, 3rbc:M, 3rbc:N, 3rbc:O, 3rbc:P, 3rbc:Q, 3rbc:R, 3rbc:S, 3rbc:T, 3rbc:U, 3rbc:V, 3rbc:W, 3rbc:X, 3re7:A, 3re7:B, 3re7:C, 3re7:D, 3re7:E, 3re7:F, 3re7:G, 3re7:H, 3re7:I, 3re7:J, 3re7:K, 3re7:L, 3re7:V, 3re7:M, 3re7:N, 3re7:O, 3re7:P, 3re7:Q, 3re7:R, 3re7:S, 3re7:T, 3re7:U, 3re7:W, 3re7:X, 3rgd:A, 3rgd:B, 3rgd:C, 3rgd:D, 3rgd:E, 3rgd:F, 3rgd:G, 3rgd:H, 3rgd:I, 3rgd:J, 3rgd:K, 3rgd:L, 3rgd:M, 3rgd:N, 3rgd:O, 3rgd:P, 3rgd:Q, 3rgd:R, 3rgd:S, 3rgd:T, 3rgd:U, 3rgd:V, 3rgd:W, 3rgd:X, 3se1:A, 3sh6:A, 5xhi:A, 5xhm:A, 5xhn:A, 5xho:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417