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BioLiP
>protein
PTKRKAQNRAAQRAFRERRAARVSELEDQIKKIEDDHEIHVATFKEQIANLSREVEQCRTEMGWWRDR

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aw7:D 93 68 1.0000 0.7312 1.0000 6.50e-45 7aw7:E, 7aw9:D, 7aw9:E
2 1gd2:E 65 42 0.3088 0.3231 0.5000 7.91e-06 1gd2:F, 1gd2:G, 1gd2:H
3 3vkh:B 2908 59 0.2794 0.0065 0.3220 0.037
4 3vkg:B 2853 56 0.2941 0.0070 0.3571 0.086
5 3vkg:A 2954 45 0.2500 0.0058 0.3778 0.12
6 3vkh:A 3042 35 0.2206 0.0049 0.4286 0.14
7 5wp6:A 977 25 0.1324 0.0092 0.3600 0.26 6bqv:A, 6bqv:C, 6bqv:B, 6bqv:D, 5wp6:B, 5wp6:C, 5wp6:D
8 5vpe:D 67 56 0.2353 0.2388 0.2857 0.35 5vpe:B, 5vpf:B, 5vpf:D
9 5nz8:A 884 46 0.1912 0.0147 0.2826 0.63
10 1ckq:A 261 34 0.1618 0.0421 0.3235 1.2 1cl8:A, 1eri:A, 2oxv:A, 1qps:A, 1qrh:A, 1qri:A
11 5t01:A 62 56 0.2206 0.2419 0.2679 2.0 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
12 3pif:D 1023 29 0.1765 0.0117 0.4138 2.0
13 3pif:C 1066 29 0.1765 0.0113 0.4138 2.1 3pif:A, 3pif:B
14 4ykn:A 1205 46 0.1765 0.0100 0.2609 4.2 4a55:A, 8am0:A, 8exl:A, 8exo:A, 8exu:A, 8exv:A, 5fi4:A, 8gub:A, 6gvf:A, 6gvg:A, 6gvi:A, 3hhm:A, 7jiu:A, 4jps:A, 4l23:A, 4l2y:A, 7mlk:A, 7myo:A, 4ovv:A, 8ow2:A, 7pg6:A, 6pys:A, 5sx9:A, 5sxj:A, 8tdu:A, 8tdu:C, 8tgd:A, 8tgd:C, 8ts9:A, 8tsa:A, 8tsb:A, 8tsc:A, 8tsd:A, 4tv3:A, 5uk8:A, 5ukj:A, 5ul1:A, 8v8h:A, 8v8h:C, 8v8i:A, 8v8i:C, 8v8j:A, 8v8j:C, 8v8v:A, 8v8v:C, 8w9a:A, 8w9b:A, 4waf:A, 5xgh:A, 5xgi:A, 3zim:A, 4zop:A
15 6z1p:AL 145 55 0.1912 0.0897 0.2364 6.6
16 2l3j:A 236 16 0.1324 0.0381 0.5625 9.3 2l3c:A
17 8fm1:I 350 27 0.1618 0.0314 0.4074 9.4
18 6m35:A 310 34 0.1912 0.0419 0.3824 9.8 6m35:B, 6m35:C, 6m35:D, 6m35:E, 6m35:F, 6m35:G, 6m35:H, 6m3x:A, 6m3x:B, 6m3x:C, 6m3x:D, 6m3x:E, 6m3x:F, 6m3x:G, 6m3x:H, 6m3x:I, 6m3x:J, 6m3x:K, 6m3x:L, 6m3x:M, 6m3x:N, 6m3x:O, 6m3x:P, 6m3x:Q, 6m3x:R, 6m3x:S, 6m3x:T, 6m3x:U, 6m3x:V, 6m3x:W, 6m3x:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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