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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PTFTERSQLKYARRLVVKLGSAVITREDNHGLALGRLASIVEQVAECHLEGREVMMVTSGAVAFGKQKLAQELLMSLSMR
ETLNLEPRAAAAVGQSGLMSLYDAMFAQYGVKIAQVLVTKPDFYNEETRNNLFCTLSELISLNIVPIINTNDAVSPPMFI
PIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIMDSKVKAATWALDRGVSVVICNGMQE
KAIKTIIGGRKVGTFFTE

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wx3:B 258 258 1.0000 1.0000 1.0000 0.0 7wx3:A, 7wx3:C, 7wx3:D, 7wx4:A
2 7f5x:A 236 258 0.9147 1.0000 0.9147 4.81e-170 7f5x:B, 7f5x:C, 7f5x:D
3 8j0g:B 274 270 0.3915 0.3686 0.3741 2.08e-49 8j0e:B, 8j0f:C, 8j0f:A, 8j0f:B, 8j0f:D, 8j27:B, 8j28:C, 8y2h:B, 8y2h:F, 8y2h:G, 8y2h:H
4 2j5t:D 365 258 0.3488 0.2466 0.3488 4.77e-35 2j5t:A, 2j5t:B, 2j5t:C, 2j5t:E, 2j5t:F, 2j5t:G
5 2j5v:B 325 243 0.3178 0.2523 0.3374 6.63e-32 2j5v:A
6 2ako:A 241 242 0.3140 0.3361 0.3347 2.45e-29 2ako:B, 2ako:C, 2ako:D
7 8u0k:A 247 252 0.2287 0.2389 0.2341 2.79e-10 8u0k:B, 8u0l:A, 8u0l:B, 8u0m:A, 8u0m:B, 8u0n:A, 8u0n:B
8 3nwy:B 231 100 0.1008 0.1126 0.2600 1.40e-05 7bes:A, 7bes:B, 7bes:C, 7bix:A, 7bix:C, 7bix:B, 7bix:E, 7bix:D, 7bix:G, 7bix:I, 7bix:H, 7bix:K, 7bix:J, 7bl7:B, 7bl7:A, 7bl7:C, 7bl7:F, 7bl7:D, 7bl7:E, 7bl7:I, 7bl7:K, 7bl7:J, 7bl7:H, 7bl7:L, 7bl7:G, 3nwy:A, 3nwy:D, 3nwy:C, 3nwy:E, 3nwy:F
9 2bne:B 238 101 0.0969 0.1050 0.2475 1.88e-04 2bnd:A, 2bnd:B, 2bne:A, 2bnf:A, 2bnf:B, 2v4y:A, 2v4y:E, 2v4y:F, 2v4y:B, 2v4y:D, 2v4y:C
10 2bty:A 282 104 0.1473 0.1348 0.3654 2.73e-04 2bty:B, 2bty:C
11 4a7x:C 234 82 0.1047 0.1154 0.3293 6.00e-04 4a7w:A, 4a7w:B, 4a7x:B, 4a7x:D, 4a7x:E
12 3ek5:A 241 189 0.1860 0.1992 0.2540 0.003 3ek5:B, 3ek5:C, 3ek5:F, 3ek5:E, 3ek5:D
13 3k4y:A 260 63 0.0775 0.0769 0.3175 0.006 3k4y:B, 3k52:A, 3k52:B, 3k56:A, 3k56:B
14 2bmu:B 226 38 0.0581 0.0664 0.3947 0.007 2bmu:A, 2bri:A, 2bri:B, 2ji5:A, 2ji5:B
15 3ll9:B 249 257 0.2326 0.2410 0.2335 0.071 3ll9:A
16 8crv:A 312 28 0.0543 0.0449 0.5000 0.36
17 3lkk:B 238 63 0.0659 0.0714 0.2698 0.49 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D
18 6rke:A 272 249 0.2364 0.2243 0.2450 0.71 4f6t:A, 6gu5:A, 6guj:A, 6gwb:A, 6gwv:A, 6gwv:P, 6gx4:A, 6h6w:A, 6h73:A, 6h74:A, 6h8b:A, 6h8h:A, 4ndo:A, 4ndp:A, 4ndq:A, 4ndr:A, 5o5w:A, 2ogx:A, 6ris:A, 6rj4:A, 6rj4:C, 6rj4:E, 6rkd:A, 6rkd:C, 6rkd:E, 6rkd:G, 6rkd:I, 6rkd:K, 6rke:C, 6rke:E, 6rke:G, 6rke:I, 6rke:K, 6yt3:A, 7z5j:A, 7z5j:C, 7z5j:E, 7z5j:I, 7z5j:G, 7z5j:K, 7zqq:A, 7zr4:A, 7zse:A
19 7lnu:A 239 118 0.1008 0.1088 0.2203 2.8 7lnt:A, 7lnx:A
20 5yei:C 397 31 0.0465 0.0302 0.3871 4.5 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
21 1e19:A 313 26 0.0426 0.0351 0.4231 8.1 1e19:B
22 3bos:B 231 42 0.0504 0.0563 0.3095 8.2 3bos:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218