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BioLiP
>protein
PTAVTGGGASLPADLYKGSADSILPANFSYAVTGSGTGKKAFLENNSALFSTTGTVHFAGSDSVLSSTELNTYNSTYNVS
GDANRYGALVQIPSVATSVTIPFNKAGSAVDLSVTQICGIFSGKINNWSQLAGLGRTGAIQVVYRGESSGTSELLTRFLT
SACQPADVSGTNLKLANGVPAFSVQSTFANLFTTVPSNFVAAPATGGSALYNAVYAVDGRVGYVGPDVIPSLTDATKVAK
VKSFSPDEVSVQATLETAAPPTGAAAENPANWVPVFGNPSAGYPIAGYTNFVFGQCYKNATVGANVRGFLTRHYGSTVVN
GVEQGPNDDAIRAHKFIPLTKAWRDAVRARFATATNAGAVNNPSTCSGIGRPL

The query sequence (length=373) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5j1d:A 373 372 0.9571 0.9571 0.9597 0.0 5jk4:A
2 4f18:A 375 397 0.4853 0.4827 0.4559 2.42e-95 4f19:A, 2q9t:A
3 4m1v:A 378 401 0.4799 0.4735 0.4464 1.61e-91 2v3q:A, 3w9v:A, 3w9v:B, 3w9w:A, 3w9w:B
4 1a40:A 321 171 0.1394 0.1620 0.3041 9.19e-05 1a54:A, 1a55:A, 2abh:A, 1ixg:A, 1ixh:A, 1ixi:A, 1pbp:A, 1qui:A, 1quj:A, 1quk:A, 1qul:A
5 4q8r:A 241 111 0.0831 0.1286 0.2793 0.001
6 1twy:A 249 51 0.0563 0.0843 0.4118 0.004
7 4lvq:A 319 161 0.1126 0.1317 0.2609 0.014 4lvq:B
8 5d1r:A 227 80 0.0617 0.1013 0.2875 1.7 5d1r:B
9 7m4u:d 207 34 0.0322 0.0580 0.3529 1.8 7m4w:d, 7m4x:d, 7m4y:d, 7m4z:d, 7ryf:d, 7ryg:d, 7ryh:d, 7uvv:d, 7uvw:d, 7uvx:d, 7uvy:d, 7uvz:d, 7uw1:d, 6v39:d, 6v3a:d, 6v3b:d, 6v3e:d, 6ypu:e, 6yt9:e
10 7poa:A 398 78 0.0643 0.0603 0.3077 2.3 7poa:B, 7pob:A, 7pob:D, 7pob:B, 7pob:C, 7poc:A, 7poc:D, 7poc:B, 7poc:C
11 5w10:A 173 30 0.0322 0.0694 0.4000 3.0 5w10:B, 5w10:C, 5w10:D
12 4uav:A 246 56 0.0509 0.0772 0.3393 3.2
13 7dm1:B 334 287 0.1850 0.2066 0.2404 3.7 7dm1:A, 7dm2:A, 1pc3:A, 1pc3:B
14 1wyu:B 473 77 0.0617 0.0486 0.2987 7.3 1wyu:D, 1wyu:F, 1wyu:H, 1wyv:B, 1wyv:D, 1wyv:F, 1wyv:H
15 6anh:A 300 110 0.0751 0.0933 0.2545 8.8 6an9:A, 6ang:A, 6aqn:A, 6au0:A, 6b18:A
16 2qbx:B 176 27 0.0241 0.0511 0.3333 9.0 2qbx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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