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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PTALAAAKARMRELAASYGAGLPGRDTHSLMHGLDGITLTFMPMGQRDGAYDPEHHVILINSQVRPERQRFTLAHEISHA
LLLGDDDLLSDLHDEYEGDRLEQVIETLCNVGAAALLMPAELIDDLLTRFGPTGRALAELARRADVSATSALYALAERTA
PPVIYAVCALSRAKELTVRASSASAGVKYSLSAGTPVPDDHPAALALDTRLPLAQDSYVPFRSGRRMPAYVDAFPERQRV
LVSFALP

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dtk:A 247 247 1.0000 1.0000 1.0000 7.31e-179 3dti:A
2 8slm:A 248 246 0.8097 0.8065 0.8130 2.86e-125 8sln:A
3 1g5c:A 169 138 0.1498 0.2189 0.2681 0.022 1g5c:B, 1g5c:C, 1g5c:D, 1g5c:E, 1g5c:F
4 7aor:aa 1558 88 0.1215 0.0193 0.3409 0.10
5 7t5t:A 278 73 0.1012 0.0899 0.3425 0.30
6 1b4p:A 217 39 0.0607 0.0691 0.3846 0.89
7 4tm7:A 243 69 0.0810 0.0823 0.2899 2.0
8 7x5h:R 274 42 0.0648 0.0584 0.3810 5.0 7um4:A, 7um5:A, 7um6:A, 7um7:A
9 7bi6:A 829 158 0.1700 0.0507 0.2658 5.4 8a9i:A, 7bi9:A, 7z74:A, 7z75:A
10 7bi2:A 1021 158 0.1700 0.0411 0.2658 5.5
11 2v0n:A 459 85 0.0931 0.0501 0.2706 6.0 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
12 5x4z:N 1074 25 0.0405 0.0093 0.4000 9.9 5x4z:B, 5x51:B, 5x51:N
13 1w5f:A 315 66 0.0810 0.0635 0.3030 10.0 1w5f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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