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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGK
EKTIIVTAAHLRRQE

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3cc2:Q 95 95 1.0000 1.0000 1.0000 9.53e-66 3cc4:Q, 3cc7:Q, 3cce:Q, 3ccj:Q, 3ccl:Q, 3ccm:Q, 3ccq:Q, 3ccr:Q, 3ccs:Q, 3ccu:Q, 3ccv:Q, 3cd6:Q, 3cma:Q, 3cme:Q, 3cpw:P, 3cxc:P, 1ffk:N, 3g4s:Q, 3g6e:Q, 3g71:Q, 3i55:Q, 3i56:Q, 1jj2:P, 1k73:R, 1k8a:R, 1k9m:R, 1kc8:R, 1kd1:R, 1kqs:P, 1m1k:R, 1m90:R, 1n8r:R, 1nji:R, 2otj:Q, 2otl:Q, 3ow2:P, 1q7y:R, 1q81:R, 1q82:R, 1q86:R, 2qa4:Q, 2qex:Q, 1qvf:P, 1qvg:P, 1s72:Q, 4v9f:Q, 1vq4:Q, 1vq5:Q, 1vq6:Q, 1vq7:Q, 1vq8:Q, 1vq9:Q, 1vqk:Q, 1vql:Q, 1vqm:Q, 1vqn:Q, 1vqo:Q, 1vqp:Q, 1w2b:P, 1yhq:Q, 1yi2:Q, 1yij:Q, 1yit:Q, 1yj9:Q, 1yjn:Q, 1yjw:Q
2 6skf:BU 96 86 0.4947 0.4896 0.5465 1.24e-25 6skg:BU, 6th6:BU, 4v4n:AR, 4v6u:BR
3 8hku:L21E 97 90 0.3684 0.3608 0.3889 4.60e-14 8hkv:L21E, 8hky:L21E, 8hkz:L21E, 8hl1:L21E, 8hl2:L21E, 8hl3:L21E, 8hl4:L21E, 8hl5:L21E
4 6zu5:LT0 160 96 0.2737 0.1625 0.2708 5.31e-04
5 8p5d:LT0 156 96 0.2421 0.1474 0.2396 6.33e-04 8p60:LT0, 8p60:KT0, 7qca:LT0
6 7qep:N1 159 95 0.2737 0.1635 0.2737 0.001
7 8azw:J 163 75 0.2105 0.1227 0.2667 0.011 8b2l:J3, 7qiw:V, 7qiz:V
8 5t5h:U 126 61 0.2000 0.1508 0.3115 0.15
9 6rm3:LT0 159 98 0.3053 0.1824 0.2959 0.18
10 5xxb:S 154 96 0.2947 0.1818 0.2917 0.21
11 4v8m:BU 158 61 0.2000 0.1203 0.3115 0.28 8ova:BU, 8ove:BU
12 6lod:E 157 57 0.2105 0.1274 0.3509 0.81 6loe:E
13 1pwh:A 327 33 0.1474 0.0428 0.4242 0.84 1pwh:B, 1pwh:C, 1pwh:D
14 6zj3:Lh 158 63 0.2211 0.1329 0.3333 0.94
15 8br8:LU 157 61 0.1684 0.1019 0.2623 1.6 8brm:LU, 8bsi:LU, 8bsj:LU, 8btd:LU, 8btr:LU, 8fru:T, 7pwg:T, 7pwo:T2
16 6sl5:5 202 54 0.1895 0.0891 0.3333 3.7
17 1p5j:A 319 38 0.1579 0.0470 0.3947 5.3
18 2dcn:A 308 13 0.0947 0.0292 0.6923 7.7 2dcn:B, 2dcn:C, 2dcn:D, 2dcn:E, 2dcn:F, 2dcn:G, 2dcn:H, 2dcn:I, 2dcn:J, 2dcn:K, 2dcn:L
19 6fyx:g 320 41 0.1474 0.0437 0.3415 9.7 6fyy:g, 6gsm:g, 6gsn:g, 8i7j:g, 5it7:g, 5it9:g, 3j80:g, 3j81:g, 3jam:g, 3jap:g, 8rw1:g, 8s8d:g, 8s8e:g, 8s8f:g, 8s8g:g, 8s8h:g, 8s8i:g, 8s8j:g, 6uz7:g

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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