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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGEQSCDQKLTNT
NRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDD
DEPGPWTKEGKDRIKKLGLTMQYPEGYLEAL

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3clz:B 210 201 0.9948 0.9048 0.9453 1.71e-139 3clz:A, 3clz:C, 3clz:D, 8jig:A, 8jig:B, 6vcs:A, 6vcs:B, 6vcs:E
2 2zkd:A 210 196 0.8429 0.7667 0.8214 1.18e-117 3f8i:A, 3f8i:B, 3f8j:B, 3fde:A, 3fde:B, 6m2v:B, 6m2v:A, 2zkd:B, 2zke:A, 2zkf:A, 2zo0:B, 2zo1:B, 2zo2:B
3 4pw7:E 198 193 0.7435 0.7172 0.7358 3.74e-101 4pw5:A, 4pw5:B, 4pw5:E, 4pw5:F, 4pw6:A, 4pw6:B, 4pw7:A, 4pw7:B, 4pw7:F
4 4ygi:A 150 172 0.3141 0.4000 0.3488 5.65e-21 3q0b:X, 3q0c:X, 3q0c:A, 3q0d:X, 3q0d:A, 3q0f:A, 3q0f:X
5 6a5n:A 502 177 0.3246 0.1235 0.3503 1.02e-20
6 6ghs:A 285 137 0.2775 0.1860 0.3869 1.88e-19
7 6a5m:A 488 176 0.3351 0.1311 0.3636 4.70e-19 6a5k:A
8 4qen:A 472 183 0.3194 0.1292 0.3333 1.45e-16 4qeo:A, 4qep:A
9 4nj5:A 482 198 0.2775 0.1100 0.2677 1.85e-08
10 6qgr:A 437 46 0.0838 0.0366 0.3478 0.18 6qgt:A, 6qii:A
11 5mg5:L 396 36 0.0733 0.0354 0.3889 0.30 5mg5:C, 5mg5:O, 5mg5:R
12 7aih:Aq 258 47 0.0890 0.0659 0.3617 3.0 7ane:Aq
13 6p8j:C 300 73 0.0995 0.0633 0.2603 3.6 6p8j:A, 6p8j:B, 6p8j:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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