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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSLRTQPSLYSGPFPFYRRPSELGCFSLDAQRQYHGDARALRYYSPPPINGPGPDFDLRDGYPDRYQPRDEEVQERLDHL
LRWVLEHRNQLEGGPGWLAGATVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETPAARAQRLARPPLLRELMY
MGYKFEQYMCADKPGGSPDPSGEVNTNVAYCSVLRSRLGNHPLLFSGEVDCLNPQAPCTQPPSCYVELKTSKEMHSPGQW
RSFYRHKLLKWWAQSFLPGVPHVVAGFRNPEGFVCSLKTFPTMEMFENVRNDREGWNPSVCMNFCAAFLSFAQSTVVQDD
PRLVHLFSWEPGGPVTVSVHRDAPYAFLPSWYVETMTQ

The query sequence (length=358) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6aix:A 358 358 1.0000 1.0000 1.0000 0.0 6aiy:A, 3fqi:A, 3fqj:A, 4j7l:A, 4j7m:A, 4j7n:A, 5uli:A, 6wre:A, 6wuf:A, 6wuk:A
2 3fqd:B 332 354 0.2793 0.3012 0.2825 4.90e-33 3fqg:A, 6wui:A
3 6wug:A 312 342 0.2654 0.3045 0.2778 6.79e-30
4 5bud:A 391 343 0.2514 0.2302 0.2624 1.74e-26 5bud:B
5 5ulj:B 386 340 0.2514 0.2332 0.2647 1.52e-24 5ulj:A
6 5bte:B 368 295 0.2123 0.2065 0.2576 2.15e-14 5bte:A
7 8k5p:O 346 278 0.1955 0.2023 0.2518 5.47e-14
8 4gpu:A 331 104 0.0726 0.0785 0.2500 0.024
9 6ywe:H 183 85 0.0670 0.1311 0.2824 0.092 6yws:H, 6ywv:H, 6ywx:H, 6ywy:H
10 8t85:A 335 65 0.0503 0.0537 0.2769 2.0 7lcm:A
11 5xct:A 167 122 0.0978 0.2096 0.2869 2.8 5xcq:A, 5xcr:A, 5xcr:D
12 7kya:A 1174 75 0.0559 0.0170 0.2667 2.8 7ky5:A, 7ky7:A, 7ky8:A, 7ky9:A
13 3suc:A 767 75 0.0559 0.0261 0.2667 3.6 3gq7:A, 3gq8:A, 3gqa:A, 3gqk:A
14 7ste:A 468 67 0.0559 0.0427 0.2985 8.8 8fs4:A, 7sh2:A
15 5jul:A 1233 125 0.0782 0.0227 0.2240 8.9 5jul:B, 5jul:C, 5jul:D, 5jul:E, 5jul:F, 5jul:G, 5jul:H, 5jul:I, 5jul:J, 5jul:K, 5jul:L, 5jul:M, 5jul:N, 5jul:O, 5jul:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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